- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.85 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x GOL: GLYCEROL(Non-functional Binders)
- 14 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 3 residues within 4Å:- Chain A: G.354, Q.474, R.475
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:R.475
SO4.5: 4 residues within 4Å:- Chain A: R.86, A.531, A.537, E.538
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:E.538, A:E.538
- Salt bridges: A:R.86
SO4.6: 4 residues within 4Å:- Chain A: G.161, F.162, S.402, L.403
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:F.162, A:L.403
SO4.7: 1 residues within 4Å:- Chain A: R.34
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:R.34
SO4.8: 4 residues within 4Å:- Chain A: R.210, F.215, Y.223, L.254
2 PLIP interactions:2 interactions with chain A- Water bridges: A:Y.223
- Salt bridges: A:R.210
SO4.9: 8 residues within 4Å:- Chain A: S.295, R.297, T.298, K.311, R.390, N.463, K.479, D.480
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:S.295, A:S.295, A:D.480
- Salt bridges: A:R.297, A:K.311, A:R.390, A:K.479
SO4.10: 4 residues within 4Å:- Chain A: G.320, F.321, M.322, P.380
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:M.322
SO4.11: 3 residues within 4Å:- Chain A: R.323, G.324, K.383
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:G.324
- Salt bridges: A:R.323, A:K.383
SO4.15: 4 residues within 4Å:- Chain B: R.86, A.531, A.537, E.538
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:E.538, B:E.538
- Salt bridges: B:R.86
SO4.16: 5 residues within 4Å:- Chain B: R.80, T.101, R.102, D.103, G.104
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:S.78, B:G.104
- Salt bridges: B:R.80
SO4.17: 4 residues within 4Å:- Chain B: G.161, F.162, S.402, L.403
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:F.162, B:L.403
SO4.18: 7 residues within 4Å:- Chain B: S.295, R.297, T.298, K.311, R.390, E.462, D.480
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:S.295, B:T.298
- Salt bridges: B:R.297, B:K.311, B:R.390, B:K.479
SO4.19: 4 residues within 4Å:- Chain B: G.320, F.321, M.322, P.380
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:M.322
SO4.20: 3 residues within 4Å:- Chain B: G.354, Q.474, R.475
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Q.474, B:R.475
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yang, J. et al., An acyl-adenylate mimic reveals the structural basis for substrate recognition by the iterative siderophore synthetase DesD. J.Biol.Chem. (2022)
- Release Date
- 2022-07-06
- Peptides
- Desferrioxamine synthetase DesD: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.85 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x GOL: GLYCEROL(Non-functional Binders)
- 14 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yang, J. et al., An acyl-adenylate mimic reveals the structural basis for substrate recognition by the iterative siderophore synthetase DesD. J.Biol.Chem. (2022)
- Release Date
- 2022-07-06
- Peptides
- Desferrioxamine synthetase DesD: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B