SMTL ID : 7tgq.1

Zinc finger antiviral protein (ZAP) central domain bound to ADP-ribose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: C.16, H.19, C.24, C.30, K.32, H.34 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.16, A:C.24, A:C.30, A:H.34

1 x APR: ADENOSINE-5-DIPHOSPHORIBOSE(Non-covalent)

APR.2: 15 residues within 4Å: Chain A: W.114, N.116, E.117, Y.124, N.133, S.134, F.155, A.157, R.160, Y.162, Q.171, N.173, S.176, T.178, K.180 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:E.117, A:R.160, A:R.160, A:Y.162, A:Y.162, A:Q.171, A:N.173, A:S.176, A:S.176, A:T.178 Water bridges: A:W.114, A:N.173, A:K.180 Salt bridges: A:R.160, A:K.180 pi-Stacking: A:W.114, A:W.114

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 4 residues within 4Å: Chain A: C.63, I.111, T.187, F.188 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:T.187 Hydrogen bonds: A:F.188 Salt bridges: A:K.60 ACT.4: 6 residues within 4Å: Chain A: H.36, L.37, Q.191, V.194, Q.195, K.198 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.194, A:Q.195, A:K.198 Hydrogen bonds: A:Q.195 Water bridges: A:Q.191 Salt bridges: A:H.36, A:K.198

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xue, G. et al., Poly(ADP-ribose) potentiates ZAP antiviral activity. Plos Pathog. (2022)

Release Date

2022-02-02

Peptides

Zinc finger CCCH-type antiviral protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Zinc finger CCCH-type antiviral protein 1

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