SMTL ID : 7ti1.1

Structure of AmpC bound to RPX-7063 at 2.0A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x ZXQ: {(3R,7S)-2-hydroxy-3-[2-(thiophen-2-yl)acetamido]-2,3,4,7-tetrahydro-1,2-oxaborepin-7-yl}acetic acid(Covalent)

ZXQ.1: 15 residues within 4Å: Chain A: G.83, S.84, K.87, L.139, Q.140, Y.170, N.172, V.231, Y.241, T.336, G.337, S.338, T.339, G.340, N.366 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.139, A:Y.170, A:V.231, A:T.336 Hydrogen bonds: A:S.84, A:Q.140, A:N.172, A:S.338, A:S.338, A:S.338, A:N.366 Water bridges: A:S.338 pi-Stacking: A:Y.241

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: E.292, H.334, K.335, T.336 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.292, A:K.335, A:T.336 Water bridges: A:S.307 EDO.3: 5 residues within 4Å: Chain A: W.113, L.177, A.180, L.181, K.184 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.184

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 2 residues within 4Å: Chain A: K.184, P.185 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Raja Reddy, K. et al., Broad-spectrum cyclic boronate beta-lactamase inhibitors featuring an intramolecular prodrug for oral bioavailability. Bioorg.Med.Chem. (2022)

Release Date

2023-01-25

Peptides

Beta-lactamase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-lactamase