SMTL ID : 7ti9.1

Crystal structure of the ubiquitin-like domain 1 (Ubl1) of Nsp3 from SARS-CoV-2, form 2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.73 Å

Oligo State

homo-dimer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: E.27, F.91, E.93, G.95, Y.104 No protein-ligand interaction detected (PLIP) GOL.2: 4 residues within 4Å: Chain A: W.83, A.86, F.107, Y.108 No protein-ligand interaction detected (PLIP) GOL.6: 5 residues within 4Å: Chain B: E.27, F.91, E.93, G.95, Y.104 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.27 GOL.7: 4 residues within 4Å: Chain B: W.83, A.86, F.107, Y.108 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Y.108

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain A: E.15 Chain B: E.15 Ligands: CL.8 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain B: K.20, A.100, S.101 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain A: E.71, T.74 Ligand excluded by PLIP CL.8: 3 residues within 4Å: Chain A: E.15 Chain B: E.15 Ligands: CL.3 Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain A: K.20, A.100, S.101 Ligand excluded by PLIP CL.10: 2 residues within 4Å: Chain B: E.71, T.74 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stogios, P.J., Crystal structure of the ubiquitin-like domain 1 (Ubl1) of Nsp3 from SARS-CoV-2, form 2. To Be Published

Release Date

2022-01-26

Peptides

Papain-like protease nsp3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Papain-like protease nsp3