SMTL ID : 7tj1.1

Crystal Structure of the Putative Fluoride Ion Transporter CrcB Bab1_1389 from Brucella abortus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-tetramer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: M.91, Q.92, D.93, K.94, R.95 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.92, A:R.95, A:R.95 Water bridges: A:T.96 EDO.2: 3 residues within 4Å: Chain A: A.126, Q.127, L.131 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.126 EDO.7: 8 residues within 4Å: Chain B: D.100, R.104, N.120, R.128 Chain C: D.100, R.104, N.120, R.128 10 PLIP interactions: 5 interactions with chain B, 5 interactions with chain C Hydrogen bonds: B:R.104, B:R.104, B:N.120, B:N.120, B:R.128, C:R.104, C:R.104, C:N.120, C:N.120, C:R.128 EDO.11: 4 residues within 4Å: Chain D: I.25, D.26, S.27, G.28 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:S.27, D:S.27, D:G.28

4 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 5 residues within 4Å: Chain A: G.82, N.83, G.87, P.102 Ligands: FMT.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.83, A:I.103 FMT.4: 6 residues within 4Å: Chain A: G.82, N.83, N.86, G.87, I.103 Ligands: FMT.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.83, A:N.86 FMT.6: 3 residues within 4Å: Chain B: K.94, R.95, T.96 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.95, B:T.96 FMT.12: 9 residues within 4Å: Chain A: D.100, R.104, N.120, R.128 Chain D: D.100, R.104, N.120, L.125, R.128 8 PLIP interactions: 5 interactions with chain A, 3 interactions with chain D Hydrogen bonds: A:R.104, A:R.104, A:N.120, A:N.120, A:R.128, D:R.104, D:R.104, D:R.128

2 x F: FLUORIDE ION(Non-covalent)

F.5: 4 residues within 4Å: Chain B: G.82, N.83, I.103, M.142 No protein-ligand interaction detected (PLIP) F.8: 3 residues within 4Å: Chain C: G.82, N.83, I.103 No protein-ligand interaction detected (PLIP)

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.9: 6 residues within 4Å: Chain C: V.56, F.57, T.58, R.59 Chain D: T.58, R.59 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:R.59 Salt bridges: C:R.59

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.10: 9 residues within 4Å: Chain D: G.82, N.83, P.84, N.86, G.87, L.101, P.102, I.103, M.142 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:N.83, D:N.86, D:G.87 Water bridges: D:A.141

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Crystal Structure of the Putative Fluoride Ion Transporter CrcB Bab1_1389 from Brucella abortus. To Be Published

Release Date

2022-01-26

Peptides

Putative fluoride ion transporter CrcB: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Putative fluoride ion transporter CrcB