- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-tetramer
- Ligands
- 4 x CMP: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE(Non-covalent)
- 24 x D21: (2R)-1-(hexadecanoyloxy)-3-(phosphonooxy)propan-2-yl (9Z)-octadec-9-enoate(Non-functional Binders)(Non-covalent)
D21.2: 2 residues within 4Å:- Ligands: D21.3, D21.7
No protein-ligand interaction detected (PLIP)D21.3: 7 residues within 4Å:- Chain A: I.47, L.51, F.55, L.164, H.168, Y.189
- Ligands: D21.2
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:I.47, A:L.51, A:L.51, A:F.55, A:H.168, A:Y.189, A:Y.189
D21.4: 6 residues within 4Å:- Chain A: A.40, Y.44, I.47, R.48, L.51, L.62
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:I.47, A:R.48, A:L.51, A:L.62
D21.5: 8 residues within 4Å:- Chain A: L.53, S.121, L.125, L.128, L.131, G.169, S.176
- Ligands: D21.6
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:L.128, A:L.131
- Hydrogen bonds: A:S.121, A:S.176
D21.6: 3 residues within 4Å:- Chain A: T.214
- Ligands: D21.5, D21.23
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:T.214
D21.7: 8 residues within 4Å:- Chain A: G.186, Y.189, L.190
- Chain B: V.221, L.224, L.225
- Ligands: D21.2, D21.13
6 PLIP interactions:3 interactions with chain B, 3 interactions with chain A- Hydrophobic interactions: B:V.221, B:L.224, B:L.225, A:Y.189, A:L.190, A:L.190
D21.9: 2 residues within 4Å:- Ligands: D21.10, D21.14
No protein-ligand interaction detected (PLIP)D21.10: 7 residues within 4Å:- Chain B: I.47, L.51, F.55, L.164, H.168, Y.189
- Ligands: D21.9
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:I.47, B:L.51, B:L.51, B:F.55, B:H.168, B:Y.189, B:Y.189
D21.11: 6 residues within 4Å:- Chain B: A.40, Y.44, I.47, R.48, L.51, L.62
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:I.47, B:R.48, B:L.51, B:L.62
D21.12: 8 residues within 4Å:- Chain B: L.53, S.121, L.125, L.128, L.131, G.169, S.176
- Ligands: D21.13
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:L.128, B:L.131
- Hydrogen bonds: B:S.121, B:S.176
D21.13: 3 residues within 4Å:- Chain B: T.214
- Ligands: D21.7, D21.12
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:T.214
D21.14: 9 residues within 4Å:- Chain B: G.186, Y.189, L.190
- Chain C: P.213, V.217, L.224, L.225
- Ligands: D21.9, D21.20
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain C- Hydrophobic interactions: B:Y.189, B:L.190, B:L.190, C:V.217, C:L.225
D21.16: 2 residues within 4Å:- Ligands: D21.17, D21.21
No protein-ligand interaction detected (PLIP)D21.17: 7 residues within 4Å:- Chain C: I.47, L.51, F.55, L.164, H.168, Y.189
- Ligands: D21.16
7 PLIP interactions:7 interactions with chain C- Hydrophobic interactions: C:I.47, C:L.51, C:L.51, C:F.55, C:H.168, C:Y.189, C:Y.189
D21.18: 6 residues within 4Å:- Chain C: A.40, Y.44, I.47, R.48, L.51, L.62
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:I.47, C:R.48, C:L.51, C:L.62
D21.19: 8 residues within 4Å:- Chain C: L.53, S.121, L.125, L.128, L.131, G.169, S.176
- Ligands: D21.20
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:L.128, C:L.131
- Hydrogen bonds: C:S.121, C:S.176
D21.20: 3 residues within 4Å:- Chain C: T.214
- Ligands: D21.14, D21.19
1 PLIP interactions:1 interactions with chain C- Hydrophobic interactions: C:T.214
D21.21: 11 residues within 4Å:- Chain C: G.186, Y.189, L.190
- Chain D: P.213, T.214, V.217, V.221, L.224, L.225
- Ligands: D21.16, D21.28
6 PLIP interactions:3 interactions with chain C, 3 interactions with chain D- Hydrophobic interactions: C:Y.189, C:L.190, C:L.190, D:V.221, D:L.225
- Hydrogen bonds: D:T.214
D21.23: 8 residues within 4Å:- Chain A: V.221, L.224, L.225
- Chain D: G.186, Y.189, L.190
- Ligands: D21.6, D21.24
6 PLIP interactions:3 interactions with chain A, 3 interactions with chain D- Hydrophobic interactions: A:V.221, A:L.224, A:L.225, D:Y.189, D:L.190, D:L.190
D21.24: 2 residues within 4Å:- Ligands: D21.23, D21.25
No protein-ligand interaction detected (PLIP)D21.25: 7 residues within 4Å:- Chain D: I.47, L.51, F.55, L.164, H.168, Y.189
- Ligands: D21.24
7 PLIP interactions:7 interactions with chain D- Hydrophobic interactions: D:I.47, D:L.51, D:L.51, D:F.55, D:H.168, D:Y.189, D:Y.189
D21.26: 6 residues within 4Å:- Chain D: A.40, Y.44, I.47, R.48, L.51, L.62
4 PLIP interactions:4 interactions with chain D- Hydrophobic interactions: D:I.47, D:R.48, D:L.51, D:L.62
D21.27: 8 residues within 4Å:- Chain D: L.53, S.121, L.125, L.128, L.131, G.169, S.176
- Ligands: D21.28
4 PLIP interactions:4 interactions with chain D- Hydrophobic interactions: D:L.128, D:L.131
- Hydrogen bonds: D:S.121, D:S.176
D21.28: 3 residues within 4Å:- Chain D: T.214
- Ligands: D21.21, D21.27
1 PLIP interactions:1 interactions with chain D- Hydrophobic interactions: D:T.214
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Schmidpeter, P.A.M. et al., Anionic lipids unlock the gates of select ion channels in the pacemaker family. Nat.Struct.Mol.Biol. (2022)
- Release Date
- 2022-10-26
- Peptides
- Putative transcriptional regulator, Crp/Fnr family: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-tetramer
- Ligands
- 4 x CMP: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE(Non-covalent)
- 24 x D21: (2R)-1-(hexadecanoyloxy)-3-(phosphonooxy)propan-2-yl (9Z)-octadec-9-enoate(Non-functional Binders)(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Schmidpeter, P.A.M. et al., Anionic lipids unlock the gates of select ion channels in the pacemaker family. Nat.Struct.Mol.Biol. (2022)
- Release Date
- 2022-10-26
- Peptides
- Putative transcriptional regulator, Crp/Fnr family: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D - Membrane
-
We predict this structure to be a membrane protein.