SMTL ID : 7tkv.1

Crystal Structure of the Thioredox_DsbH Domain-Containing Uncharacterized Protein Bab1_2064 from Brucella abortus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: Y.441, F.448, D.493, K.496 No protein-ligand interaction detected (PLIP) GOL.2: 4 residues within 4Å: Chain A: F.288, A.289, E.290, G.292 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.290 GOL.6: 5 residues within 4Å: Chain A: I.184, E.591 Chain B: R.495, K.498, R.499 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.495, B:K.498, B:R.499

6 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 5 residues within 4Å: Chain A: R.495, K.498, R.499, L.548, L.557 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.498, A:R.499 PO4.4: 9 residues within 4Å: Chain A: Q.95, Y.530, D.531, E.532, I.534, P.535, S.536, A.537, Q.540 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Q.95, A:Y.530, A:E.532, A:E.532, A:I.534, A:I.534, A:A.537, A:Q.540 PO4.7: 6 residues within 4Å: Chain B: R.87, Y.275, W.413, E.532, A.533, I.534 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:A.533, B:I.534 Salt bridges: B:R.87 PO4.8: 2 residues within 4Å: Chain B: P.179, E.566 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:P.179, B:E.566 PO4.9: 4 residues within 4Å: Chain B: R.452, P.465, S.504, A.516 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.452, B:S.504 PO4.10: 7 residues within 4Å: Chain B: T.546, F.549, Y.558, N.561, E.562, I.565, A.589 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.561

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 3 residues within 4Å: Chain A: R.87, E.532, A.533 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Crystal Structure of the Thioredox_DsbH Domain-Containing Uncharacterized Protein Bab1_2064 from Brucella abortus. To Be Published

Release Date

2022-01-26

Peptides

Thioredox_DsbH domain-containing protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Thioredox_DsbH domain-containing protein