SMTL ID : 7tl0.1

Cryo-EM structure of hMPV preF bound by Fabs MPE8 and SAN32-2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-3-3-3-mer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 8 residues within 4Å: Chain A: F.168, K.171, N.172, R.175, S.192, F.196 Chain C: P.64, D.183 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 9 residues within 4Å: Chain A: P.64, D.183 Chain B: F.168, K.171, N.172, R.175, K.188, S.192, F.196 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.183, A:D.183 NAG-NAG.3: 9 residues within 4Å: Chain B: P.64, D.183 Chain C: F.168, K.171, N.172, R.175, K.188, S.192, F.196 No protein-ligand interaction detected (PLIP)

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 1 residues within 4Å: Chain A: N.57 No protein-ligand interaction detected (PLIP) NAG.5: 3 residues within 4Å: Chain A: E.349, I.352, N.353 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.352 Hydrogen bonds: A:N.353 NAG.6: 3 residues within 4Å: Chain B: E.56, N.57 Chain F: K.104 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.56 NAG.7: 6 residues within 4Å: Chain B: E.349, I.352, N.353, T.356, T.357, N.358 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:E.349, B:I.352 Hydrogen bonds: B:E.349, B:N.353 NAG.8: 2 residues within 4Å: Chain C: N.57 Chain H: K.104 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.57 NAG.9: 7 residues within 4Å: Chain C: Q.346, E.349, I.352, N.353, T.356, T.357, N.358 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:I.352 Hydrogen bonds: C:N.358

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rush, S.A. et al., Characterization of prefusion-F-specific antibodies elicited by natural infection with human metapneumovirus. Cell Rep (2022)

Release Date

2022-09-14

Peptides

Fusion glycoprotein F0: ABC
SAN32-2 Fab heavy chain: DFH
SAN32-2 Fab light chain: EGI
MPE8 Fab heavy chain: JLN
MPE8 Fab light chain: KMO

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

F
F

H
H

E
E

G
G

I
I

J
J

L
L

N
N

K
K

M
M

O
O

Fusion glycoprotein F0

SAN32-2 Fab heavy chain

SAN32-2 Fab light chain

MPE8 Fab heavy chain

MPE8 Fab light chain

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