SMTL ID : 7tl7.1 (3 other biounits)

1.90A resolution structure of independent phosphoglycerate mutase from C. elegans in complex with a macrocyclic peptide inhibitor (Sa-D2)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-mer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: K.341, D.408, H.412, H.467 Chain B: C.14 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Metal complexes: A:D.408, A:D.408, A:H.412, A:H.467, B:C.14 ZN.2: 5 residues within 4Å: Chain A: D.19, S.68, K.341, D.449, H.450 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.19, A:D.19, A:S.68, A:D.449, A:H.450

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 4 residues within 4Å: Chain A: I.32, L.33, A.35, T.37 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.35, A:T.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

van Neer, R.H.P. et al., Serum-Stable and Selective Backbone-N-Methylated Cyclic Peptides That Inhibit Prokaryotic Glycolytic Mutases. Acs Chem.Biol. (2022)

Release Date

2022-08-10

Peptides

2,3-bisphosphoglycerate-independent phosphoglycerate mutase: A
peptide Sa-D2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
a

2,3-bisphosphoglycerate-independent phosphoglycerate mutase

peptide Sa-D2

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