SMTL ID : 7tlr.1

Structure of Atopobium parvulum SufS A34Y mutant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Non-covalent)

PLP.1: 14 residues within 4Å: Chain A: N.120, T.121, S.122, H.150, T.198, N.202, D.227, A.229, Q.230, S.250, H.252, K.253 Chain B: G.303, T.304 17 PLIP interactions: 15 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:H.150, A:Q.230 Hydrogen bonds: A:T.121, A:S.122, A:S.122, A:N.202, A:Q.230, A:S.250, A:S.250, A:K.253, B:T.304, B:T.304 Water bridges: A:S.122, A:H.150 Salt bridges: A:H.252, A:K.253 pi-Stacking: A:H.150 PLP.2: 14 residues within 4Å: Chain A: G.303, T.304 Chain B: N.120, T.121, S.122, H.150, T.198, N.202, D.227, A.229, Q.230, S.250, H.252, K.253 16 PLIP interactions: 13 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:H.150, B:Q.230 Hydrogen bonds: B:T.121, B:S.122, B:S.122, B:N.202, B:Q.230, B:S.250, A:T.304, A:T.304, A:T.304 Water bridges: B:H.150, B:K.253 Salt bridges: B:H.252, B:K.253 pi-Stacking: B:H.150

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Karunakaran, G. et al., Structural analysis of Atopobium parvulum SufS cysteine desulfurase linked to Crohn's disease. Febs Lett. (2022)

Release Date

2022-02-16

Peptides

Cysteine desulfurase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cysteine desulfurase