SMTL ID : 7tm5.1 (1 other biounit)

Crystal structure of shikimate-3-phosphate bound 3-phosphoshikimate 1-carboxyvinyltransferase from Klebsiella pneumoniae

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.41 Å

Oligo State

monomer

Ligands

1 x S3P: SHIKIMATE-3-PHOSPHATE(Non-covalent)

S3P.1: 14 residues within 4Å: Chain A: K.30, S.31, R.35, T.105, S.177, S.178, Q.179, S.205, Y.208, D.321, N.344, K.348 Ligands: FMT.2, PO4.3 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:Q.179, A:Y.208, A:Y.208, A:Y.208 Hydrogen bonds: A:K.30, A:S.177, A:S.178, A:Q.179, A:Q.179, A:S.205, A:D.321, A:N.344, A:N.344, A:K.348, A:K.348 Water bridges: A:S.177, A:S.177, A:S.178, A:T.182, A:Y.208, A:R.352, A:R.352 Salt bridges: A:R.35, A:K.348

2 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 8 residues within 4Å: Chain A: K.30, D.321, E.349, R.352, H.393, R.394 Ligands: S3P.1, PO4.3 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.30, A:E.349, A:R.352, A:R.352, A:R.394 FMT.6: 2 residues within 4Å: Chain A: R.340, R.375 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.340, A:R.340, A:R.375, A:R.375

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 11 residues within 4Å: Chain A: K.30, N.102, A.103, G.104, T.105, R.132, Q.179, E.349, K.419 Ligands: S3P.1, FMT.2 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:G.104, A:T.105, A:Q.179 Water bridges: A:K.30, A:K.30, A:R.132, A:R.132, A:Q.179 Salt bridges: A:K.30, A:R.132, A:K.419

1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.4: 5 residues within 4Å: Chain A: D.210, L.213, H.214, N.276, S.277 2 PLIP interactions: 2 interactions with chain A Water bridges: A:K.217, A:K.217

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 3 residues within 4Å: Chain A: R.91, G.117, S.118 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.91, A:S.118 Water bridges: A:S.118, A:S.118

1 x NO3: NITRATE ION(Non-functional Binders)

NO3.7: 1 residues within 4Å: Chain A: R.162 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.162, A:R.162 Water bridges: A:R.160, A:R.160

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, L. et al., Crystal structure of shikimate-3-phosphate bound 3-phosphoshikimate 1-carboxyvinyltransferase from Klebsiella pneumoniae. To be published

Release Date

2022-02-02

Peptides

3-phosphoshikimate 1-carboxyvinyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

3-phosphoshikimate 1-carboxyvinyltransferase

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