SMTL ID : 7tm8.1

Crystal structure of Bifunctional adenosylcobalamin biosynthesis protein from Klebsiella pneumoniae

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-trimer

Ligands

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: G.16, R.18, S.19, G.20, K.21, S.22 15 PLIP interactions: 13 interactions with chain A, 2 interactions with chain C Hydrogen bonds: A:R.18, A:R.18, A:S.19, A:G.20, A:K.21, A:S.22, A:S.22, C:Q.168 Water bridges: A:K.21, A:K.21, A:K.21, A:K.21, A:R.23, C:Q.168 Salt bridges: A:K.21 SO4.2: 6 residues within 4Å: Chain A: G.148, I.149 Chain B: G.148, I.149 Chain C: G.148, I.149 6 PLIP interactions: 2 interactions with chain B, 1 interactions with chain C, 3 interactions with chain A Hydrogen bonds: B:I.149, B:I.149, C:I.149, A:I.149 Water bridges: A:I.149, A:I.149 SO4.3: 3 residues within 4Å: Chain A: R.154, R.157, H.158 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.154, A:H.158 Salt bridges: A:R.154, A:R.157, A:H.158 SO4.4: 6 residues within 4Å: Chain B: G.16, R.18, S.19, G.20, K.21, S.22 16 PLIP interactions: 2 interactions with chain A, 14 interactions with chain B Hydrogen bonds: A:Q.168, B:G.16, B:R.18, B:S.19, B:G.20, B:K.21, B:S.22 Water bridges: A:Q.168, B:K.21, B:K.21, B:K.21, B:K.21, B:S.22, B:S.22, B:R.23 Salt bridges: B:K.21 SO4.5: 3 residues within 4Å: Chain B: R.154, R.157, H.158 3 PLIP interactions: 3 interactions with chain B Salt bridges: B:R.154, B:R.157, B:H.158 SO4.6: 6 residues within 4Å: Chain C: G.16, R.18, S.19, G.20, K.21, S.22 15 PLIP interactions: 14 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:G.16, C:R.18, C:S.19, C:G.20, C:K.21, C:S.22, B:Q.168 Water bridges: C:G.20, C:K.21, C:K.21, C:K.21, C:K.21, C:R.23 Salt bridges: C:R.18, C:K.21 SO4.7: 3 residues within 4Å: Chain C: R.154, R.157, H.158 4 PLIP interactions: 4 interactions with chain C Water bridges: C:R.154 Salt bridges: C:R.154, C:R.157, C:H.158

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, L. et al., Crystal structure of Bifunctional adenosylcobalamin biosynthesis protein from Klebsiella pneumoniae. To be published

Release Date

2022-02-02

Peptides

Bifunctional adenosylcobalamin biosynthesis protein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Bifunctional adenosylcobalamin biosynthesis protein