SMTL ID : 7tn1.1

Multistate design to stabilize viral class I fusion proteins

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

homo-trimer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: N.496, I.499, N.500, L.503 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.499, A:L.503 Hydrogen bonds: A:N.496 NAG.2: 2 residues within 4Å: Chain B: N.496, N.500 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:N.496 Hydrogen bonds: B:N.500 NAG.3: 1 residues within 4Å: Chain C: N.500 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.500

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gonzalez, K.J. et al., A general computational design strategy for stabilizing viral class I fusion proteins. Nat Commun (2024)

Release Date

2023-07-12

Peptides

Fusion glycoprotein F0: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

B
A

C
B

Fusion glycoprotein F0