SMTL ID : 7tn9.1

Structure of the Inmazeb cocktail and resistance to escape against Ebola virus

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-3-3-3-3-2-2-mer

Ligands

3 x NAG- NAG- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN.1: 19 residues within 4Å: Chain B: L.40, K.125, E.126, G.127, A.128, V.150 Chain F: Y.49, Q.55 Chain H: A.5, Q.6, P.7, N.61, T.64 Chain J: K.98, R.99, G.100, Y.101, S.104, D.106 2 PLIP interactions: 1 interactions with chain F, 1 interactions with chain B Hydrogen bonds: F:S.53, B:K.125 NAG-NAG-BMA-MAN-MAN-MAN.2: 19 residues within 4Å: Chain C: L.40, N.43, K.125, E.126, A.128, V.150 Chain E: L.46, Y.49, Q.55 Chain I: K.98, R.99, G.100, Y.101, P.102, S.104, D.106 Chain O: A.5, N.61, T.64 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:K.125 NAG-NAG-BMA-MAN-MAN-MAN.3: 18 residues within 4Å: Chain D: L.40, K.125, E.126, A.128, V.150 Chain M: L.46, Y.49, Q.55 Chain N: K.98, G.100, Y.101, S.104, D.106 Chain O: F.33 Chain P: A.5, Q.6, N.61, T.64 3 PLIP interactions: 1 interactions with chain M, 1 interactions with chain N, 1 interactions with chain D Hydrogen bonds: M:Y.49, N:Y.101, D:K.125

8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 2 residues within 4Å: Chain B: N.198, E.199 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.198, B:E.199 NAG.5: 2 residues within 4Å: Chain B: N.208 Chain V: T.59 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.208 NAG.6: 3 residues within 4Å: Chain B: N.227, E.228, Y.231 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:E.228 NAG.7: 1 residues within 4Å: Chain C: N.198 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.198 NAG.8: 2 residues within 4Å: Chain C: N.208 Chain G: T.59 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.208 NAG.9: 1 residues within 4Å: Chain D: N.198 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.198 NAG.10: 1 residues within 4Å: Chain D: N.208 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.208 NAG.11: 4 residues within 4Å: Chain D: V.206, N.227, E.228, Y.231 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:E.228, D:Y.231

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rayaprolu, V. et al., Structure of the Inmazeb cocktail and resistance to Ebola virus escape. Cell Host Microbe (2023)

Release Date

2023-01-25

Peptides

REGN3471 heavy chain: AST
Envelope glycoprotein: BCD
REGN3479 light chain: EFM
REGN3471 light chain: GUV
GP2: HOP
REGN3479 heavy chain: IJN
REGN3470 heavy chain: KQ
REGN3470 light chain: LR

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

S
C

T
E

B
T

C
S

D
U

E
R

F
N

M
P

G
F

U
B

V
D

H
W

O
V

P
X

I
Q

J
M

N
O

K
G

Q
I

L
H

R
J

REGN3471 heavy chain

Envelope glycoprotein

REGN3479 light chain

REGN3471 light chain

GP2

REGN3479 heavy chain

REGN3470 heavy chain

REGN3470 light chain