- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.39 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
SF4.1: 10 residues within 4Å:- Chain A: C.98, A.99, C.133, G.134, F.136
- Chain B: C.98, C.133
- Ligands: SFS.2, SF4.5, SFS.6
2 PLIP interactions:2 interactions with chain A,- Metal complexes: A:C.98, A:C.133
SF4.5: 10 residues within 4Å:- Chain A: C.98, C.133
- Chain B: C.98, A.99, C.133, G.134, F.136
- Ligands: SF4.1, SFS.2, SFS.6
2 PLIP interactions:2 interactions with chain B,- Metal complexes: B:C.98, B:C.133
- 2 x SFS: Fe4-Se4 cluster(Non-covalent)
SFS.2: 12 residues within 4Å:- Chain A: C.98, A.99, G.100, C.133, G.134, F.136
- Chain B: G.97, C.98, C.133
- Ligands: SF4.1, SF4.5, SFS.6
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:C.98, A:C.133
SFS.6: 12 residues within 4Å:- Chain A: G.97, C.98, C.133
- Chain B: C.98, A.99, G.100, C.133, G.134, F.136
- Ligands: SF4.1, SFS.2, SF4.5
2 PLIP interactions:2 interactions with chain B- Metal complexes: B:C.98, B:C.133
- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 4 residues within 4Å:- Chain A: S.17, D.40, D.44
- Ligands: ADP.4
5 PLIP interactions:1 interactions with chain A, 4 Ligand-Water interactions- Metal complexes: A:S.17, H2O.2, H2O.2, H2O.3, H2O.4
MG.7: 4 residues within 4Å:- Chain B: S.17, D.40, D.44
- Ligands: ADP.8
5 PLIP interactions:1 interactions with chain B, 4 Ligand-Water interactions- Metal complexes: B:S.17, H2O.10, H2O.11, H2O.11, H2O.12
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.4: 21 residues within 4Å:- Chain A: K.11, G.12, G.13, I.14, G.15, K.16, S.17, T.18, N.186, V.212, P.213, R.214, D.215, V.218, Q.219, E.222, Q.237, Y.241
- Chain B: M.157, M.275
- Ligands: MG.3
25 PLIP interactions:25 interactions with chain A- Hydrogen bonds: A:K.11, A:G.13, A:I.14, A:G.15, A:K.16, A:S.17, A:T.18, A:T.18, A:N.186, A:P.213, A:D.215, A:Q.219, A:E.222, A:Q.237, A:Y.241
- Water bridges: A:K.16, A:S.17, A:S.17, A:K.42, A:R.214, A:R.214, A:R.214, A:R.214, A:R.214
- Salt bridges: A:K.16
ADP.8: 21 residues within 4Å:- Chain A: M.157, M.275
- Chain B: K.11, G.12, G.13, I.14, G.15, K.16, S.17, T.18, N.186, V.212, P.213, R.214, D.215, V.218, Q.219, E.222, Q.237, Y.241
- Ligands: MG.7
26 PLIP interactions:26 interactions with chain B- Hydrogen bonds: B:K.11, B:G.13, B:I.14, B:G.15, B:K.16, B:S.17, B:T.18, B:T.18, B:N.186, B:P.213, B:D.215, B:Q.219, B:E.222, B:Q.237
- Water bridges: B:K.16, B:S.17, B:S.17, B:K.42, B:R.214, B:R.214, B:R.214, B:R.214, B:R.214, B:E.222, B:E.222
- Salt bridges: B:K.16
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Buscagan, T.M. et al., Selenocyanate derived Se-incorporation into the Nitrogenase Fe protein cluster. Elife (2022)
- Release Date
- 2022-09-14
- Peptides
- Nitrogenase iron protein 1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.39 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 2 x SFS: Fe4-Se4 cluster(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Buscagan, T.M. et al., Selenocyanate derived Se-incorporation into the Nitrogenase Fe protein cluster. Elife (2022)
- Release Date
- 2022-09-14
- Peptides
- Nitrogenase iron protein 1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A