SMTL ID : 7tnh.1

Crystal structure of CSF1R kinase domain in complex with DP-6233

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 5 residues within 4Å: Chain A: I.219, M.220, D.222, Y.225, R.232 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.222, A:Y.225, A:R.232

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 1 residues within 4Å: Chain A: G.125 Ligand excluded by PLIP CL.3: 4 residues within 4Å: Chain A: E.113, N.114, Q.177, Q.180 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain A: R.145, N.224 Ligand excluded by PLIP CL.5: 1 residues within 4Å: Chain A: K.299 Ligand excluded by PLIP

1 x I9W: 2,2-dimethyl-N-[(6-methyl-5-{[2-(1-methyl-1H-pyrazol-4-yl)pyridin-4-yl]oxy}pyridin-2-yl)carbamoyl]propanamide(Non-covalent)

I9W.6: 20 residues within 4Å: Chain A: W.19, L.57, V.65, A.83, M.106, L.109, V.116, T.132, E.133, Y.134, C.135, C.136, G.138, L.185, H.192, L.201, I.210, G.211, D.212, F.213 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:W.19, A:L.57, A:A.83, A:L.109, A:L.185, A:L.201, A:D.212, A:F.213 Hydrogen bonds: A:C.135, A:D.212, A:D.212

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Caldwell, T.M. et al., Discovery of acyl ureas as highly selective small molecule CSF1R kinase inhibitors. Bioorg.Med.Chem.Lett. (2022)

Release Date

2022-08-24

Peptides

Macrophage colony-stimulating factor 1 receptor,Fibroblast growth factor receptor 1 chimera: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Macrophage colony-stimulating factor 1 receptor,Fibroblast growth factor receptor 1 chimera