SMTL ID : 7tot.1

Crystal Structure of pantothenate synthetase from Bartonella henselae

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

4 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 8 residues within 4Å: Chain A: P.38, M.40, N.68, Q.71, V.138, V.141, V.142, Q.163 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:P.38, A:V.142 Hydrogen bonds: A:Q.71, A:Q.71, A:Q.163 MPD.2: 8 residues within 4Å: Chain A: H.44, G.46, H.47, L.50, G.157, K.159, V.183, L.186 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.183, A:L.186 Hydrogen bonds: A:D.160 Water bridges: A:G.157, A:D.160 MPD.8: 9 residues within 4Å: Chain B: P.38, M.40, N.68, Q.71, V.138, V.141, V.142, F.156, Q.163 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:P.38, B:V.142, B:F.156 Hydrogen bonds: B:Q.71, B:Q.71, B:Q.163 MPD.9: 9 residues within 4Å: Chain B: H.44, G.46, H.47, L.50, G.157, K.159, V.183, P.184, L.186 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:L.50, B:L.50, B:V.183, B:L.186 Water bridges: B:G.157

7 x NO3: NITRATE ION(Non-functional Binders)

NO3.3: 4 residues within 4Å: Chain A: K.159, S.195, S.196, R.197 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.159, A:S.195, A:S.196, A:R.197 NO3.5: 6 residues within 4Å: Chain A: N.147, Q.150, F.176 Chain B: N.147, Q.150, F.176 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Q.150, A:Q.150 NO3.6: 4 residues within 4Å: Chain A: K.10, M.11, C.89, E.93 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.93 Water bridges: A:A.90 NO3.7: 2 residues within 4Å: Chain A: L.30, G.31 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.30 Water bridges: A:G.31 NO3.10: 3 residues within 4Å: Chain B: K.159, S.195, S.196 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.159, B:K.159, B:S.196, B:S.196 NO3.12: 4 residues within 4Å: Chain B: K.10, M.11, C.89, E.93 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:M.11 NO3.13: 3 residues within 4Å: Chain B: L.30, G.31, F.32 1 PLIP interactions: 1 interactions with chain B Water bridges: B:G.31

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 2 residues within 4Å: Chain A: R.168, R.169 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.169 SO4.11: 3 residues within 4Å: Chain B: L.165, R.168, R.169 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.169

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bolejack, M.J. et al., Crystal Structure of pantothenate synthetase from Bartonella henselae. to be published

Release Date

2022-04-13

Peptides

Pantothenate synthetase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Pantothenate synthetase