SMTL ID : 7trm.1

Crystal structure of human BIRC2 BIR3 domain in complex with inhibitor LCL-161

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.54, C.57, H.74, C.81 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.54, A:C.57, A:H.74, A:C.81

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: T.23, Y.45, V.46, G.47 Ligands: EDO.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.46 EDO.3: 6 residues within 4Å: Chain A: N.11, S.13, M.14, Y.44, Y.45 Ligands: EDO.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.11, A:S.13, A:Y.45 EDO.4: 5 residues within 4Å: Chain A: G.67, D.68, D.69, V.72, E.73 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.68, A:D.69, A:E.73

1 x IUN: LCL-161(Non-covalent)

IUN.5: 13 residues within 4Å: Chain A: V.46, D.51, V.52, K.53, G.60, L.61, R.62, C.63, W.64, E.65, D.68, E.73, W.77 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:D.51, A:W.64, A:W.77 Hydrogen bonds: A:R.62, A:R.62, A:D.68

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tencer, A.H. et al., Molecular basis for nuclear accumulation and targeting of the inhibitor of apoptosis BIRC2. Nat.Struct.Mol.Biol. (2023)

Release Date

2023-08-02

Peptides

Baculoviral IAP repeat-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Baculoviral IAP repeat-containing protein 2

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