SMTL ID : 7trn.1 (1 other biounit)

Crystal structure of R14A-R20A human Galectin-7 mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-dimer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: H.49, R.53, V.60, N.62, W.69, E.72 Chain B: L.24, P.85 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.53, A:N.62, A:E.72, A:E.72, A:E.72 GOL.11: 3 residues within 4Å: Chain B: K.6, S.7, S.8 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.8, B:S.8 Water bridges: B:K.6, B:S.8 GOL.13: 3 residues within 4Å: Chain B: D.55, T.56, S.57 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.57, B:S.57 Water bridges: B:L.54, B:S.57

11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 8 residues within 4Å: Chain A: R.31, F.32, H.33, H.49, N.51, G.124, G.125, D.126 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.31, A:N.51 Water bridges: A:H.49, A:N.51 EDO.3: 3 residues within 4Å: Chain A: S.30, D.55, R.82 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.82, A:R.82 EDO.4: 6 residues within 4Å: Chain A: P.76, G.77, V.78, P.79, A.104, Y.106 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:P.76 Water bridges: A:Q.105 EDO.5: 4 residues within 4Å: Chain A: S.7, S.8, L.9, I.134 1 PLIP interactions: 1 interactions with chain A Water bridges: A:I.134 EDO.6: 6 residues within 4Å: Chain B: H.49, R.53, V.60, N.62, W.69, E.72 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.53, B:N.62 EDO.7: 7 residues within 4Å: Chain A: T.56 Chain B: H.5, L.129, D.130, S.131, V.132 Ligands: EDO.14 2 PLIP interactions: 2 interactions with chain A Water bridges: A:E.58, A:R.74 EDO.8: 5 residues within 4Å: Chain A: S.68 Chain B: P.27, N.28, R.82, G.83 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:P.27, B:R.82 EDO.9: 5 residues within 4Å: Chain B: E.58, R.74, G.75, P.76, G.77 2 PLIP interactions: 2 interactions with chain B Water bridges: B:G.75, B:G.77 EDO.10: 6 residues within 4Å: Chain B: P.76, P.79, V.101, A.104, Q.105, Y.106 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:V.101 Water bridges: B:Q.105 EDO.12: 4 residues within 4Å: Chain B: S.7, S.8, L.9, I.134 No protein-ligand interaction detected (PLIP) EDO.14: 7 residues within 4Å: Chain A: D.55, T.56 Chain B: H.5, S.131, V.132, R.133 Ligands: EDO.7 5 PLIP interactions: 1 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:D.55, B:V.132, B:V.132, B:R.133, B:R.133

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pham, N.T.H. et al., Crystal structure of R14A-R20A human Galectin-7 mutant. To Be Published

Release Date

2023-02-01

Peptides

Galectin-7: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Galectin-7

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