SMTL ID : 7trw.1

Crystal Structure of the C-terminal Ligand-Binding Domain of the LysR family Transcriptional Regulator YfbA from Yersinia pestis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.28 Å

Oligo State

homo-dimer

Ligands

2 x 3HB: 3-HYDROXYBENZOIC ACID(Non-covalent)

3HB.1: 10 residues within 4Å: Chain A: A.17, L.18, A.21, T.22, V.61, R.79, Q.81, P.159, M.161, E.216 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:A.17, A:L.18, A:L.18, A:R.79 Hydrogen bonds: A:T.22, A:Q.81 Salt bridges: A:R.79 3HB.3: 10 residues within 4Å: Chain B: A.17, L.18, A.21, T.22, V.61, R.79, Q.81, P.159, M.161, E.216 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:A.17, B:L.18, B:L.18, B:R.79 Hydrogen bonds: B:T.22, B:Q.81 Salt bridges: B:R.79

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 6 residues within 4Å: Chain A: I.118, W.119, N.120, Q.157, V.181, R.182 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.118, A:N.120, A:N.120, A:Q.157 PO4.4: 6 residues within 4Å: Chain B: I.118, W.119, N.120, Q.157, V.181, R.182 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:I.118, B:N.120, B:N.120, B:Q.157

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Crystal Structure of the C-terminal Ligand-Binding Domain of the LysR family Transcriptional Regulator YfbA from Yersinia pestis. To Be Published

Release Date

2022-02-09

Peptides

LysR-family transcriptional regulatory protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

LysR-family transcriptional regulatory protein