SMTL ID : 7ttm.1

Crystal structure of potent neutralizing antibody 10-40 in complex with Sarbecovirus bat SHC014 receptor-binding domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.24 Å

Oligo State

hetero-1-1-1-mer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: D.46, S.48, V.49, N.52 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.48 Water bridges: A:N.52 NAG.2: 5 residues within 4Å: Chain A: F.20, G.21, F.24, N.25, V.49 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.24, A:V.49 Hydrogen bonds: A:N.25 NAG.3: 3 residues within 4Å: Chain A: N.16, C.43, T.204 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.16

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, L. et al., An antibody class with a common CDRH3 motif broadly neutralizes sarbecoviruses. Sci Transl Med (2022)

Release Date

2022-04-27

Peptides

Spike protein S1: A
1040 heavy chain: B
1040 light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

C
L

Spike protein S1

1040 heavy chain

1040 light chain

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