- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-hexamer
- Ligands
- 6 x DGT: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 6 x DTP: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE(Non-covalent)
DTP.2: 13 residues within 4Å:- Chain A: R.50, V.55, D.58, R.59, F.62
- Chain B: V.96, S.100, R.329, A.330, I.333, G.334, I.337
- Ligands: MG.4
12 PLIP interactions:4 interactions with chain B, 8 interactions with chain A- Hydrophobic interactions: B:I.333, A:F.62
- Hydrogen bonds: B:S.100, B:S.100, B:R.329, A:R.50, A:R.50, A:R.59
- Salt bridges: A:R.50, A:R.59
- pi-Cation interactions: A:R.50, A:R.50
DTP.7: 13 residues within 4Å:- Chain A: V.96, S.100, R.329, A.330, I.333, G.334, I.337
- Chain B: R.50, V.55, D.58, R.59, F.62
- Ligands: MG.5
13 PLIP interactions:9 interactions with chain B, 4 interactions with chain A- Hydrophobic interactions: B:F.62, A:I.333
- Hydrogen bonds: B:R.50, B:R.50, B:D.58, B:R.59, A:S.100, A:S.100, A:R.329
- Salt bridges: B:R.50, B:R.59
- pi-Cation interactions: B:R.50, B:R.50
DTP.10: 13 residues within 4Å:- Chain C: R.50, V.55, D.58, R.59, F.62
- Chain D: V.96, S.100, R.329, A.330, I.333, G.334, I.337
- Ligands: MG.12
12 PLIP interactions:8 interactions with chain C, 4 interactions with chain D- Hydrophobic interactions: C:F.62, D:I.333
- Hydrogen bonds: C:R.50, C:R.50, C:R.59, D:S.100, D:S.100, D:R.329
- Salt bridges: C:R.50, C:R.59
- pi-Cation interactions: C:R.50, C:R.50
DTP.15: 13 residues within 4Å:- Chain C: V.96, S.100, R.329, A.330, I.333, G.334, I.337
- Chain D: R.50, V.55, D.58, R.59, F.62
- Ligands: MG.13
13 PLIP interactions:9 interactions with chain D, 4 interactions with chain C- Hydrophobic interactions: D:F.62, C:I.333
- Hydrogen bonds: D:R.50, D:R.50, D:D.58, D:R.59, C:S.100, C:S.100, C:R.329
- Salt bridges: D:R.50, D:R.59
- pi-Cation interactions: D:R.50, D:R.50
DTP.18: 13 residues within 4Å:- Chain E: R.50, V.55, D.58, R.59, F.62
- Chain F: V.96, S.100, R.329, A.330, I.333, G.334, I.337
- Ligands: MG.20
12 PLIP interactions:8 interactions with chain E, 4 interactions with chain F- Hydrophobic interactions: E:F.62, F:I.333
- Hydrogen bonds: E:R.50, E:R.50, E:R.59, F:S.100, F:S.100, F:R.329
- Salt bridges: E:R.50, E:R.59
- pi-Cation interactions: E:R.50, E:R.50
DTP.23: 13 residues within 4Å:- Chain E: V.96, S.100, R.329, A.330, I.333, G.334, I.337
- Chain F: R.50, V.55, D.58, R.59, F.62
- Ligands: MG.21
13 PLIP interactions:4 interactions with chain E, 9 interactions with chain F- Hydrophobic interactions: E:I.333, F:F.62
- Hydrogen bonds: E:S.100, E:S.100, E:R.329, F:R.50, F:R.50, F:D.58, F:R.59
- Salt bridges: F:R.50, F:R.59
- pi-Cation interactions: F:R.50, F:R.50
- 12 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
MG.3: 4 residues within 4Å:- Chain A: H.90, H.138, D.139, D.275
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:H.90, A:H.138, A:D.139, A:D.275
MG.4: 1 residues within 4Å:- Ligands: DTP.2
No protein-ligand interaction detected (PLIP)MG.5: 1 residues within 4Å:- Ligands: DTP.7
No protein-ligand interaction detected (PLIP)MG.8: 4 residues within 4Å:- Chain B: H.90, H.138, D.139, D.275
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:H.90, B:H.138, B:D.139, B:D.275
MG.11: 4 residues within 4Å:- Chain C: H.90, H.138, D.139, D.275
4 PLIP interactions:4 interactions with chain C- Metal complexes: C:H.90, C:H.138, C:D.139, C:D.275
MG.12: 1 residues within 4Å:- Ligands: DTP.10
No protein-ligand interaction detected (PLIP)MG.13: 1 residues within 4Å:- Ligands: DTP.15
No protein-ligand interaction detected (PLIP)MG.16: 4 residues within 4Å:- Chain D: H.90, H.138, D.139, D.275
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:H.90, D:H.138, D:D.139, D:D.275
MG.19: 4 residues within 4Å:- Chain E: H.90, H.138, D.139, D.275
4 PLIP interactions:4 interactions with chain E- Metal complexes: E:H.90, E:H.138, E:D.139, E:D.275
MG.20: 1 residues within 4Å:- Ligands: DTP.18
No protein-ligand interaction detected (PLIP)MG.21: 1 residues within 4Å:- Ligands: DTP.23
No protein-ligand interaction detected (PLIP)MG.24: 4 residues within 4Å:- Chain F: H.90, H.138, D.139, D.275
4 PLIP interactions:4 interactions with chain F- Metal complexes: F:H.90, F:H.138, F:D.139, F:D.275
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Klemm, B.P. et al., High-resolution structures of the SAMHD1 dGTPase homolog from Leeuwenhoekiella blandensis reveal a novel mechanism of allosteric activation by dATP. J.Biol.Chem. (2022)
- Release Date
- 2022-06-01
- Peptides
- dGTP triphosphohydrolase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-hexamer
- Ligands
- 6 x DGT: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 6 x DTP: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE(Non-covalent)
- 12 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Klemm, B.P. et al., High-resolution structures of the SAMHD1 dGTPase homolog from Leeuwenhoekiella blandensis reveal a novel mechanism of allosteric activation by dATP. J.Biol.Chem. (2022)
- Release Date
- 2022-06-01
- Peptides
- dGTP triphosphohydrolase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F