SMTL ID : 7tuo.1

Crystal structure analysis of human USP28 complex with a compound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.96 Å

Oligo State

monomer

Ligands

2 x KL9: 7-amino-N-(2-{4-[(1R,3s,5S)-8-azabicyclo[3.2.1]octan-3-yl]phenyl}ethyl)-3-methylthieno[2,3-b]pyrazine-6-carboxamide(Non-covalent)

KL9.1: 22 residues within 4Å: Chain A: V.29, S.32, L.33, V.109, S.110, T.113, H.114, L.117, F.145, G.167, Q.168, T.217, E.219, F.223, K.234, L.269, H.271, A.275, Y.280, Y.322, C.323, M.325 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:V.109, A:F.145, A:A.275, A:Y.322, A:Y.322 Hydrogen bonds: A:Q.168, A:E.219, A:K.234, A:K.234 KL9.2: 13 residues within 4Å: Chain A: T.210, K.211, L.212, D.248, M.251, Y.252, G.253, S.254, Q.260, V.261, Y.263, N.328, K.330 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:K.330 Hydrogen bonds: A:L.212, A:L.212, A:D.248, A:S.258, A:Y.263, A:N.328 Water bridges: A:K.330

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 1 residues within 4Å: Chain A: Q.243 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Seo, H.-S. et al., Crystal Structure Analysis of human USP28 complex with a compound. To Be Published

Release Date

2023-02-15

Peptides

Ubiquitin carboxyl-terminal hydrolase 28: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ubiquitin carboxyl-terminal hydrolase 28