- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-8-8-8-8-mer
- Ligands
- 48 x BCL: BACTERIOCHLOROPHYLL A(Non-covalent)(Non-functional Binders)
- 16 x LYC: LYCOPENE(Non-covalent)
LYC.3: 15 residues within 4Å:- Chain 2: K.9, I.10, L.12
- Chain 4: A.27, F.37
- Chain 5: A.16, V.17, Q.20, F.21, T.24
- Chain A: A.31, I.32, H.35
- Ligands: BCL.4, BCL.58
9 PLIP interactions:3 interactions with chain 5, 2 interactions with chain 4, 2 interactions with chain A, 2 interactions with chain 2- Hydrophobic interactions: 5:A.16, 5:Q.20, 5:T.24, 4:A.27, 4:F.37, A:A.31, A:H.35, 2:K.9, 2:L.12
LYC.5: 13 residues within 4Å:- Chain 4: L.12
- Chain A: A.27, F.37
- Chain B: A.16, V.17, Q.20, F.21, T.24
- Chain C: A.31, I.32, H.35
- Ligands: BCL.8, BCL.62
8 PLIP interactions:2 interactions with chain A, 1 interactions with chain 4, 3 interactions with chain B, 2 interactions with chain C- Hydrophobic interactions: A:A.27, A:F.37, 4:L.12, B:A.16, B:Q.20, B:T.24, C:A.31, C:H.35
LYC.11: 15 residues within 4Å:- Chain E: A.31, I.32, H.35
- Chain I: K.9, I.10, L.12
- Chain K: A.27, F.37
- Chain L: A.16, V.17, Q.20, F.21, T.24
- Ligands: BCL.12, BCL.18
9 PLIP interactions:2 interactions with chain E, 2 interactions with chain K, 3 interactions with chain L, 2 interactions with chain I- Hydrophobic interactions: E:A.31, E:H.35, K:A.27, K:F.37, L:A.16, L:Q.20, L:T.24, I:K.9, I:L.12
LYC.13: 13 residues within 4Å:- Chain E: A.27, F.37
- Chain F: A.16, V.17, Q.20, F.21, T.24
- Chain G: A.31, I.32, H.35
- Chain K: L.12
- Ligands: BCL.16, BCL.22
8 PLIP interactions:2 interactions with chain E, 2 interactions with chain G, 3 interactions with chain F, 1 interactions with chain K- Hydrophobic interactions: E:A.27, E:F.37, G:A.31, G:H.35, F:A.16, F:Q.20, F:T.24, K:L.12
LYC.17: 15 residues within 4Å:- Chain A: K.9, I.10, L.12
- Chain C: A.27, F.37
- Chain D: A.16, V.17, Q.20, F.21, T.24
- Chain I: A.31, I.32, H.35
- Ligands: BCL.1, BCL.20
9 PLIP interactions:2 interactions with chain I, 3 interactions with chain D, 2 interactions with chain A, 2 interactions with chain C- Hydrophobic interactions: I:A.31, I:H.35, D:A.16, D:Q.20, D:T.24, A:K.9, A:L.12, C:A.27, C:F.37
LYC.21: 13 residues within 4Å:- Chain C: L.12
- Chain I: A.27, F.37
- Chain J: A.16, V.17, Q.20, F.21, T.24
- Chain K: A.31, I.32, H.35
- Ligands: BCL.6, BCL.24
8 PLIP interactions:3 interactions with chain J, 2 interactions with chain K, 1 interactions with chain C, 2 interactions with chain I- Hydrophobic interactions: J:A.16, J:Q.20, J:T.24, K:A.31, K:H.35, C:L.12, I:A.27, I:F.37
LYC.27: 14 residues within 4Å:- Chain 0: A.27
- Chain 1: A.16, V.17, Q.20, F.21, T.24
- Chain M: A.31, I.32, H.35
- Chain Y: K.9, I.10, L.12
- Ligands: BCL.28, BCL.50
8 PLIP interactions:2 interactions with chain Y, 2 interactions with chain M, 1 interactions with chain 0, 3 interactions with chain 1- Hydrophobic interactions: Y:K.9, Y:L.12, M:A.31, M:H.35, 0:A.27, 1:A.16, 1:Q.20, 1:T.24
LYC.29: 12 residues within 4Å:- Chain 0: L.12
- Chain M: A.27
- Chain N: A.16, V.17, Q.20, F.21, T.24
- Chain O: A.31, I.32, H.35
- Ligands: BCL.32, BCL.54
7 PLIP interactions:1 interactions with chain 0, 3 interactions with chain N, 2 interactions with chain O, 1 interactions with chain M- Hydrophobic interactions: 0:L.12, N:A.16, N:Q.20, N:T.24, O:A.31, O:H.35, M:A.27
LYC.33: 14 residues within 4Å:- Chain M: K.9, I.10, L.12
- Chain O: A.27
- Chain P: A.16, V.17, Q.20, F.21, T.24
- Chain Q: A.31, I.32, H.35
- Ligands: BCL.25, BCL.36
8 PLIP interactions:2 interactions with chain M, 3 interactions with chain P, 1 interactions with chain O, 2 interactions with chain Q- Hydrophobic interactions: M:K.9, M:L.12, P:A.16, P:Q.20, P:T.24, O:A.27, Q:A.31, Q:H.35
LYC.37: 12 residues within 4Å:- Chain O: L.12
- Chain Q: A.27
- Chain R: A.16, V.17, Q.20, F.21, T.24
- Chain S: A.31, I.32, H.35
- Ligands: BCL.30, BCL.40
7 PLIP interactions:3 interactions with chain R, 1 interactions with chain O, 2 interactions with chain S, 1 interactions with chain Q- Hydrophobic interactions: R:A.16, R:Q.20, R:T.24, O:L.12, S:A.31, S:H.35, Q:A.27
LYC.41: 14 residues within 4Å:- Chain Q: K.9, I.10, L.12
- Chain S: A.27
- Chain T: A.16, V.17, Q.20, F.21, T.24
- Chain U: A.31, I.32, H.35
- Ligands: BCL.34, BCL.44
8 PLIP interactions:3 interactions with chain T, 2 interactions with chain Q, 2 interactions with chain U, 1 interactions with chain S- Hydrophobic interactions: T:A.16, T:Q.20, T:T.24, Q:K.9, Q:L.12, U:A.31, U:H.35, S:A.27
LYC.45: 12 residues within 4Å:- Chain S: L.12
- Chain U: A.27
- Chain V: A.16, V.17, Q.20, F.21, T.24
- Chain W: A.31, I.32, H.35
- Ligands: BCL.38, BCL.48
7 PLIP interactions:2 interactions with chain W, 1 interactions with chain U, 3 interactions with chain V, 1 interactions with chain S- Hydrophobic interactions: W:A.31, W:H.35, U:A.27, V:A.16, V:Q.20, V:T.24, S:L.12
LYC.49: 14 residues within 4Å:- Chain U: K.9, I.10, L.12
- Chain W: A.27
- Chain X: A.16, V.17, Q.20, F.21, T.24
- Chain Y: A.31, I.32, H.35
- Ligands: BCL.42, BCL.52
8 PLIP interactions:2 interactions with chain U, 3 interactions with chain X, 2 interactions with chain Y, 1 interactions with chain W- Hydrophobic interactions: U:K.9, U:L.12, X:A.16, X:Q.20, X:T.24, Y:A.31, Y:H.35, W:A.27
LYC.53: 12 residues within 4Å:- Chain 0: A.31, I.32, H.35
- Chain W: L.12
- Chain Y: A.27
- Chain Z: A.16, V.17, Q.20, F.21, T.24
- Ligands: BCL.46, BCL.56
7 PLIP interactions:3 interactions with chain Z, 1 interactions with chain W, 1 interactions with chain Y, 2 interactions with chain 0- Hydrophobic interactions: Z:A.16, Z:Q.20, Z:T.24, W:L.12, Y:A.27, 0:A.31, 0:H.35
LYC.57: 15 residues within 4Å:- Chain 2: A.31, I.32, H.35
- Chain E: K.9, I.10, L.12
- Chain G: A.27, F.37
- Chain H: A.16, V.17, Q.20, F.21, T.24
- Ligands: BCL.9, BCL.60
9 PLIP interactions:3 interactions with chain H, 2 interactions with chain 2, 2 interactions with chain G, 2 interactions with chain E- Hydrophobic interactions: H:A.16, H:Q.20, H:T.24, 2:A.31, 2:H.35, G:A.27, G:F.37, E:K.9, E:L.12
LYC.61: 13 residues within 4Å:- Chain 2: A.27, F.37
- Chain 3: A.16, V.17, Q.20, F.21, T.24
- Chain 4: A.31, I.32, H.35
- Chain G: L.12
- Ligands: BCL.14, BCL.64
8 PLIP interactions:2 interactions with chain 2, 1 interactions with chain G, 3 interactions with chain 3, 2 interactions with chain 4- Hydrophobic interactions: 2:A.27, 2:F.37, G:L.12, 3:A.16, 3:Q.20, 3:T.24, 4:A.31, 4:H.35
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wang, D. et al., Elucidating interprotein energy transfer dynamics within the antenna network from purple bacteria. Proc.Natl.Acad.Sci.USA (2023)
- Release Date
- 2023-02-15
- Peptides
- Light-harvesting protein B800-820 alpha chain: ACEGIK24
Light-harvesting protein B800-820 beta chain: BDFHJL35
Light-harvesting protein B-800/850 alpha chain: MOQSUWY0
Light-harvesting protein B-800/850 beta 1 chain: NPRTVXZ1 - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
DE
CG
GI
IK
K2
c4
eB
BD
EF
FH
HJ
JL
L3
d5
fM
MO
OQ
QS
SU
UW
WY
Y0
aN
NP
PR
RT
TV
VX
XZ
Z1
b - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-8-8-8-8-mer
- Ligands
- 48 x BCL: BACTERIOCHLOROPHYLL A(Non-covalent)(Non-functional Binders)
- 16 x LYC: LYCOPENE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wang, D. et al., Elucidating interprotein energy transfer dynamics within the antenna network from purple bacteria. Proc.Natl.Acad.Sci.USA (2023)
- Release Date
- 2023-02-15
- Peptides
- Light-harvesting protein B800-820 alpha chain: ACEGIK24
Light-harvesting protein B800-820 beta chain: BDFHJL35
Light-harvesting protein B-800/850 alpha chain: MOQSUWY0
Light-harvesting protein B-800/850 beta 1 chain: NPRTVXZ1 - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
DE
CG
GI
IK
K2
c4
eB
BD
EF
FH
HJ
JL
L3
d5
fM
MO
OQ
QS
SU
UW
WY
Y0
aN
NP
PR
RT
TV
VX
XZ
Z1
b - Membrane
-
We predict this structure to be a membrane protein.