SMTL ID : 7tve.1

ATP and DNA bound SMC5/6 core complex

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 20 residues within 4Å: Chain D: T.1007, R.1014, T.1018, S.1020, G.1021, G.1022, E.1023 Chain E: V.51, T.52, N.71, G.72, G.74, K.75, S.76, T.77, R.95, D.101, Q.182, Q.1015, P.1049 21 PLIP interactions: 15 interactions with chain E, 6 interactions with chain D Hydrogen bonds: E:G.72, E:G.72, E:G.74, E:K.75, E:S.76, E:S.76, E:S.76, E:N.105, E:N.105, E:Q.182, E:Q.182, E:Q.1015, D:R.1014, D:R.1014, D:S.1020, D:G.1022, D:E.1023 Salt bridges: E:K.75, E:R.95, E:R.95 pi-Cation interactions: D:R.1014

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yu, Y. et al., Cryo-EM structure of DNA-bound Smc5/6 reveals DNA clamping enabled by multi-subunit conformational changes. Proc.Natl.Acad.Sci.USA (2022)

Release Date

2022-06-22

Peptides

Non-structural maintenance of chromosomes element 1: C
Structural maintenance of chromosomes protein 6: D
Structural maintenance of chromosomes protein 5: E
Non-structural maintenance of chromosome element 3: F
Non-structural maintenance of chromosome element 4: G

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
C

D
D

E
E

F
F

G
G

Non-structural maintenance of chromosomes element 1

Structural maintenance of chromosomes protein 6

Structural maintenance of chromosomes protein 5

Non-structural maintenance of chromosome element 3

Non-structural maintenance of chromosome element 4