SMTL ID : 7twe.1 (1 other biounit)

Crystal Structure of the Putative Oxidoreductase of DUF1479-containing Protein Family YPO2976 from Yersinia pestis Bound to 2-oxo-glutaric acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.41 Å

Oligo State

monomer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: H.202, D.204, H.342 Ligands: AKG.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.202, A:D.204, A:H.342, H2O.1

1 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)

AKG.2: 13 residues within 4Å: Chain A: R.188, L.199, H.202, D.204, Q.258, W.260, L.273, W.336, H.342, V.344, V.356, Y.358 Ligands: MN.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.273, A:V.344, A:Y.358 Hydrogen bonds: A:Q.258, A:Y.358 Salt bridges: A:R.188, A:H.342

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Crystal Structure of the Putative Oxidoreductase of DUF1479-containing Protein Family YPO2976 from Yersinia pestis Bound to 2-oxo-glutaric acid. To Be Published

Release Date

2022-02-16

Peptides

DUF1479 domain-containing protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DUF1479 domain-containing protein

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