SMTL ID : 7tx5.1

Neutron crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with ADP-ribose at 293 K (C2 crystal form)

Coordinates

PDB Format

Method

NEUTRON DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x APR: ADENOSINE-5-DIPHOSPHORIBOSE(Covalent)

APR.1: 29 residues within 4Å: Chain A: A.20, D.21, I.22, V.23, A.37, A.38, N.39, K.43, H.44, G.45, G.46, G.47, V.48, A.49, G.50, A.51, P.124, L.125, L.126, S.127, A.128, G.129, I.130, F.131, G.132, A.153, V.154, F.155, L.159 23 PLIP interactions: 23 interactions with chain A Hydrogen bonds: A:I.22, A:N.39, A:N.39, A:G.45, A:G.47, A:V.48, A:A.49, A:A.49, A:S.127, A:S.127, A:A.128, A:G.129, A:I.130, A:F.131, A:F.155 Water bridges: A:D.21, A:D.21, A:A.38, A:H.44, A:L.125, A:L.125, A:A.128, A:I.130

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Correy, G.J. et al., The mechanisms of catalysis and ligand binding for the SARS-CoV-2 NSP3 macrodomain from neutron and x-ray diffraction at room temperature. Sci Adv (2022)

Release Date

2022-02-23

Peptides

Papain-like protease nsp3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Papain-like protease nsp3

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