SMTL ID : 7tx9.1

Human Synaptotagmin-1 C2B Y312F Ca2+ bound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.34 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: D.39, D.45, D.99, Y.100, D.101 Ligands: CA.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.39, A:D.45, A:D.99, A:Y.100, H2O.1 CA.2: 5 residues within 4Å: Chain A: M.38, D.39, D.99, D.101 Ligands: CA.1 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:M.38, A:D.39, A:D.99, A:D.101, A:D.101

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: K.49, H.51, R.58, K.61 4 PLIP interactions: 4 interactions with chain A Salt bridges: A:K.49, A:H.51, A:R.58, A:K.61

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 2 residues within 4Å: Chain A: G.104, K.105 Ligand excluded by PLIP CL.5: 5 residues within 4Å: Chain A: F.47, K.49, L.98, N.106 Ligands: 1PG.8 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain A: T.65, I.66 Ligands: 1PG.8 Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain A: Q.139, W.140 Ligand excluded by PLIP

1 x 1PG: 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL(Non-covalent)

1PG.8: 10 residues within 4Å: Chain A: F.47, K.49, K.63, T.64, T.65, I.66, Y.100, N.106 Ligands: CL.5, CL.6 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.63

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dominguez, M.J. et al., Human Synaptotagmin-1 C2B Y312F Ca2+ bound. To Be Published

Release Date

2023-03-29

Peptides

Synaptotagmin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Synaptotagmin

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