SMTL ID : 7txz.1

Nipah Virus attachment (G) glycoprotein ectodomain in complex with nAH1.3 neutralizing antibody Fab fragment (local refinement of the distal region)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-2-2-mer

Ligands

11 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: V.237, N.243, Y.246 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 4 residues within 4Å: Chain A: T.298, Y.300, N.354, S.356 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 5 residues within 4Å: Chain A: Q.371, N.415, W.416, R.417, N.418 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.371, A:Q.371 NAG-NAG.5: 4 residues within 4Å: Chain A: N.96 Chain G: S.98, C.99, P.100 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 3 residues within 4Å: Chain B: V.237, N.243, Y.246 No protein-ligand interaction detected (PLIP) NAG-NAG.7: 2 residues within 4Å: Chain B: N.315, S.317 No protein-ligand interaction detected (PLIP) NAG-NAG.8: 4 residues within 4Å: Chain B: T.298, K.352, N.354, S.356 No protein-ligand interaction detected (PLIP) NAG-NAG.9: 5 residues within 4Å: Chain B: L.407, N.415, W.416, R.417, N.418 No protein-ligand interaction detected (PLIP) NAG-NAG.11: 4 residues within 4Å: Chain B: N.96, P.211 Chain H: S.98, P.100 No protein-ligand interaction detected (PLIP) NAG-NAG.12: 5 residues within 4Å: Chain A: S.98, C.99, P.100 Chain G: E.94, N.96 No protein-ligand interaction detected (PLIP) NAG-NAG.13: 4 residues within 4Å: Chain B: S.98, C.99, P.100 Chain H: N.96 No protein-ligand interaction detected (PLIP)

2 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.3: 4 residues within 4Å: Chain A: R.432, F.433, N.434, N.466 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.433 NAG-NAG-FUC.10: 4 residues within 4Å: Chain B: R.432, F.433, N.434, N.466 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.14: 2 residues within 4Å: Chain A: N.315, S.317 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.315

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, Z. et al., Architecture and antigenicity of the Nipah virus attachment glycoprotein. Science (2022)

Release Date

2022-03-09

Peptides

Glycoprotein G: ABGH
nAH1.3 Fab heavy chain: CE
nAH1.3 Fab light chain: DF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

G
D

H
C

C
E

E
H

D
F

F
L

Glycoprotein G

nAH1.3 Fab heavy chain

nAH1.3 Fab light chain

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