SMTL ID : 7tze.1

Structure of murine LAG3 domains 1-2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.12 Å

Oligo State

homo-dimer

Ligands

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 10 residues within 4Å: Chain A: I.146, N.162, C.163, S.164, F.165, R.170, T.196, F.197 Chain B: I.146, S.148 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.162, A:F.165, A:F.165, A:T.196 Hydrophobic interactions: B:I.146 NAG.2: 4 residues within 4Å: Chain A: H.175, V.214, T.216, N.222 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.175, A:N.222 NAG.3: 9 residues within 4Å: Chain A: I.146, S.148 Chain B: I.146, N.162, C.163, S.164, F.165, T.196, F.197 7 PLIP interactions: 5 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:N.162, B:F.165, B:F.165, B:T.196 Water bridges: B:P.168, A:S.148 Hydrophobic interactions: A:I.146 NAG.4: 3 residues within 4Å: Chain B: V.214, G.220, N.222 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:V.214 Hydrogen bonds: B:N.222

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 6 residues within 4Å: Chain B: V.174, H.175, W.176, P.184, V.185, Y.186 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:W.176, B:V.185 EDO.6: 4 residues within 4Å: Chain B: V.10, W.11, D.219, F.221 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:V.9, B:W.11

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ming, Q. et al., LAG3 ectodomain structure reveals functional interfaces for ligand and antibody recognition. Nat.Immunol. (2022)

Release Date

2022-05-11

Peptides

Lymphocyte activation gene 3 protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Lymphocyte activation gene 3 protein