SMTL ID : 7tzg.1

Structure of human LAG3 in complex with antibody single-chain variable fragment

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.71 Å

Oligo State

hetero-2-2-mer

Ligands

7 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain C: G.226, N.228 No protein-ligand interaction detected (PLIP) NAG.2: 2 residues within 4Å: Chain C: N.166 Chain D: A.200 No protein-ligand interaction detected (PLIP) NAG.3: 1 residues within 4Å: Chain C: N.321 No protein-ligand interaction detected (PLIP) NAG.4: 2 residues within 4Å: Chain C: N.234, G.265 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.234 NAG.5: 5 residues within 4Å: Chain C: E.201 Chain D: N.166, S.168, S.170, F.203 4 PLIP interactions: 3 interactions with chain D, 1 interactions with chain C Hydrophobic interactions: D:F.203, C:E.201 Hydrogen bonds: D:N.166, D:S.170 NAG.6: 2 residues within 4Å: Chain D: R.184, N.234 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:R.184, D:N.234 NAG.7: 4 residues within 4Å: Chain D: H.312, Q.318, Q.319, N.321 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ming, Q. et al., LAG3 ectodomain structure reveals functional interfaces for ligand and antibody recognition. Nat.Immunol. (2022)

Release Date

2022-05-11

Peptides

scFvF7: AB
Lymphocyte activation gene 3 protein: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

scFvF7

Lymphocyte activation gene 3 protein