SMTL ID : 7u0d.1

Local refinement of cryo-EM structure of the interface of the Omicron RBD in complex with antibodies B-182.1 and A19-46.1

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: D.9, F.12, N.13 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.12 Hydrogen bonds: A:D.9, A:N.13

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, T. et al., Structural basis for potent antibody neutralization of SARS-CoV-2 variants including B.1.1.529. Science (2022)

Release Date

2022-03-30

Peptides

Surface glycoprotein: A
Heavy chain of SARS-CoV-2 antibody A19-46.1: B
Light chain of SARS-CoV-2 antibody A19-46.1: C
Heavy chain of SARS-CoV-2 antibody B1-182.1: D
Light chain of SARS-CoV-2 antibody B1-182.1: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
M

C
N

D
O

E
P

Surface glycoprotein

Heavy chain of SARS-CoV-2 antibody A19-46.1

Light chain of SARS-CoV-2 antibody A19-46.1

Heavy chain of SARS-CoV-2 antibody B1-182.1

Light chain of SARS-CoV-2 antibody B1-182.1

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