SMTL ID : 7u1z.2 (1 other biounit)

Crystal structure of the DRBD and CROPs of TcdA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.18 Å

Oligo State

monomer

Ligands

16 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: S.337, G.338 Ligand excluded by PLIP SO4.2: 3 residues within 4Å: Chain A: D.1179, S.1180, K.1185 Ligand excluded by PLIP SO4.3: 2 residues within 4Å: Chain A: F.959, N.960 Ligand excluded by PLIP SO4.4: 3 residues within 4Å: Chain A: N.538, K.539, K.583 Ligand excluded by PLIP SO4.5: 4 residues within 4Å: Chain A: G.400, R.402, S.403, D.432 Ligand excluded by PLIP SO4.6: 1 residues within 4Å: Chain A: H.339 Ligand excluded by PLIP SO4.7: 1 residues within 4Å: Chain A: K.1494 Ligand excluded by PLIP SO4.8: 2 residues within 4Å: Chain A: Q.1464, N.1479 Ligand excluded by PLIP SO4.9: 5 residues within 4Å: Chain A: S.1083, Y.1094, D.1096, N.1097, R.1106 Ligand excluded by PLIP SO4.10: 2 residues within 4Å: Chain A: Q.1082, K.1084 Ligand excluded by PLIP SO4.11: 2 residues within 4Å: Chain A: T.92, N.95 Ligand excluded by PLIP SO4.12: 2 residues within 4Å: Chain A: P.359, S.360 Ligand excluded by PLIP SO4.13: 3 residues within 4Å: Chain A: E.670, D.671, I.672 Ligand excluded by PLIP SO4.14: 2 residues within 4Å: Chain A: R.1622, T.1623 Ligand excluded by PLIP SO4.15: 2 residues within 4Å: Chain A: E.443, D.444 Ligand excluded by PLIP SO4.16: 2 residues within 4Å: Chain A: K.1556, Q.1593 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, B. et al., Structure and conformational dynamics of Clostridioides difficile toxin A. Life Sci Alliance (2022)

Release Date

2022-03-09

Peptides

Toxin A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Toxin A

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