SMTL ID : 7u35.3 (2 other biounits)

Crystal Structure of UDP-N-acetylmuramoylalanine--D-glutamate ligase (MurD) from Pseudomonas aeruginosa PAO1 in complex with ADP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 15 residues within 4Å: Chain A: N.118, A.119, K.120, S.121, T.122, N.183, H.274, N.278, H.308, R.309, D.324, K.326, A.327, A.332, A.335 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:A.119, A:K.120, A:S.121, A:S.121, A:T.122, A:T.122, A:E.162, A:N.278, A:N.278, A:H.308, A:D.324 Water bridges: A:N.183, A:N.183, A:K.326 Salt bridges: A:K.120, A:R.309, A:K.326, A:K.326 pi-Stacking: A:H.274

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: T.328, A.425, S.426, N.432, F.433 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.426, A:F.433

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abendroth, J. et al., Crystal Structure of UDP-N-acetylmuramoylalanine--D-glutamate ligase (MurD) from Pseudomonas aeruginosa PAO1 in complex with ADP. to be published

Release Date

2022-03-09

Peptides

UDP-N-acetylmuramoylalanine--D-glutamate ligase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

UDP-N-acetylmuramoylalanine--D-glutamate ligase

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