SMTL ID : 7u48.1 (2 other biounits)

Clavulanic acid-CTX-M-15

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.67 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 2 residues within 4Å: Chain A: E.274, S.275 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.274, A:E.274, A:S.275, A:S.275 GOL.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x LBX: (E)-5-hydroxy-3-oxo-N-(3-oxopropylidene)-L-norvaline(Covalent)

LBX.2: 12 residues within 4Å: Chain A: C.72, S.73, S.133, N.135, E.169, P.170, N.173, G.239, S.240, G.241, G.242 Ligands: SO4.3 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.73, A:N.135, A:E.169, A:E.169, A:N.173, A:S.240

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 8 residues within 4Å: Chain A: S.73, S.133, T.219, K.237, T.238, G.239, S.240 Ligands: LBX.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.133, A:T.238, A:T.238 Salt bridges: A:K.237

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ahmadvand, P. et al., Characterization of Interactions between CTX-M-15 and Clavulanic Acid, Desfuroylceftiofur, Ceftiofur, Ampicillin, and Nitrocefin. Int J Mol Sci (2022)

Release Date

2022-05-25

Peptides

Beta-lactamase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-lactamase

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