SMTL ID : 7u4q.1

Human Synaptotagmin-1 C2A Y181F Ca2+ bound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.56 Å

Oligo State

homo-dimer

Ligands

3 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: D.39, D.45, D.97, F.98, D.99 Ligands: CA.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.39, A:D.45, A:D.97, A:F.98, H2O.3 CA.2: 6 residues within 4Å: Chain A: L.38, D.39, D.97, D.99, D.105 Ligands: CA.1 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.39, A:D.97, A:D.99, A:D.105, H2O.3 CA.3: 4 residues within 4Å: Chain A: D.99, S.102, K.103, D.105 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.99, A:S.102, A:K.103, A:D.105, H2O.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dominguez, M.J. et al., The AD3 locus of synaptotagmin-1 C2 domains modulates domain stability. Biophys.J. (2024)

Release Date

2023-03-15

Peptides

Synaptotagmin-1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Synaptotagmin-1