SMTL ID : 7u6u.1

Structure of an intellectual disability-associated ornithine decarboxylase variant G84R in complex with PLP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)

PLP.1: 13 residues within 4Å: Chain A: A.67, K.69, D.88, R.154, H.197, G.236, G.237, E.274, P.275, G.276, R.277, Y.389 Chain B: C.360 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:A.67, A:K.69 Hydrogen bonds: A:G.237, A:G.276, A:R.277, A:Y.389, A:Y.389 Water bridges: A:R.154, A:F.238, A:R.277, A:R.277 Salt bridges: A:K.69, A:H.197, A:R.277 pi-Stacking: A:H.197 PLP.2: 13 residues within 4Å: Chain A: C.360 Chain B: A.67, K.69, D.88, R.154, H.197, G.236, G.237, E.274, P.275, G.276, R.277, Y.389 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:A.67, B:K.69 Hydrogen bonds: B:K.69, B:G.237, B:G.276, B:R.277, B:Y.389, B:Y.389 Water bridges: B:R.154, B:F.238, B:R.277, B:R.277 Salt bridges: B:H.197, B:R.277 pi-Stacking: B:H.197

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, X.E. et al., Structure and Enzymatic Activity of an Intellectual Disability-Associated Ornithine Decarboxylase Variant, G84R. Acs Omega (2022)

Release Date

2022-10-19

Peptides

Ornithine decarboxylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ornithine decarboxylase

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