SMTL ID : 7u71.1

Crystal Structure of Mouse Cadherin-23 EC13-15

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

monomer

Ligands

6 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: E.18, D.72, E.74, D.107 Ligands: CA.2 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.18, A:D.72, A:E.74, A:D.107, H2O.3, H2O.7 CA.2: 7 residues within 4Å: Chain A: E.18, E.74, D.104, E.105, D.107, D.141 Ligands: CA.1 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.18, A:D.104, A:E.105, A:D.107, A:D.141 CA.3: 6 residues within 4Å: Chain A: N.106, N.108, D.139, D.141, N.145, D.195 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:N.108, A:D.139, A:D.139, A:D.141, A:N.145 CA.4: 5 residues within 4Å: Chain A: E.124, D.180, E.182, D.216 Ligands: CA.5 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.124, A:D.180, A:E.182, A:D.216, H2O.7, H2O.7 CA.5: 8 residues within 4Å: Chain A: E.124, E.182, D.213, V.214, D.216, N.217, D.250 Ligands: CA.4 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.124, A:D.213, A:V.214, A:D.216, A:D.250 CA.6: 6 residues within 4Å: Chain A: N.215, N.217, D.248, D.250, N.254, D.302 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:N.217, A:D.248, A:D.250, A:N.254, A:D.302

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.7: 4 residues within 4Å: Chain A: S.151, L.152, E.162, I.163 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.152, A:I.163

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

De La Torre, P. et al., Crystal Structure of Mouse Cadherin-23 EC13-15. To be published

Release Date

2023-03-15

Peptides

Cadherin-23: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Cadherin-23