SMTL ID : 7u9g.1

Rabies virus glycoprotein pre-fusion trimer in complex with neutralizing antibody RVA122

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-3-mer

Ligands

9 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 1 residues within 4Å: Chain A: N.338 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.338 NAG.2: 5 residues within 4Å: Chain A: D.162, D.165, S.167, N.177, S.179 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.162, A:S.167 NAG.3: 3 residues within 4Å: Chain A: S.265, N.266, E.267 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.266 NAG.4: 1 residues within 4Å: Chain B: N.338 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.338 NAG.5: 5 residues within 4Å: Chain B: D.162, D.165, S.167, N.177, S.179 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.162, B:S.167 NAG.6: 3 residues within 4Å: Chain B: S.265, N.266, E.267 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.266 NAG.7: 1 residues within 4Å: Chain C: N.338 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.338 NAG.8: 3 residues within 4Å: Chain C: S.265, N.266, E.267 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.266 NAG.9: 5 residues within 4Å: Chain C: D.162, D.165, S.167, N.177, S.179 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:D.162, C:S.167

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Callaway, H.M. et al., Structure of the rabies virus glycoprotein trimer bound to a prefusion-specific neutralizing antibody. Sci Adv (2022)

Release Date

2022-07-20

Peptides

Glycoprotein: ABC
RVA122 Fab Light Chain: DEF
RVA122 Fab Heavy Chain: GHI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

Glycoprotein

RVA122 Fab Light Chain

RVA122 Fab Heavy Chain