SMTL ID : 7u9i.1

Co-crystal structure of human CARM1 in complex with MT556 inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x 44T: 7-[5-S-(4-{[(4-ethylpyridin-3-yl)methyl]amino}butyl)-5-thio-beta-D-ribofuranosyl]-7H-pyrrolo[2,3-d]pyrimidin-4-amine(Non-covalent)

44T.1: 22 residues within 4Å: Chain A: Y.5, Y.9, M.18, R.24, G.48, G.50, E.70, A.71, S.72, G.96, K.97, V.98, E.99, E.113, P.114, M.115, Y.117, E.122, M.124, S.127, H.270, W.271 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:Y.5, A:M.18, A:A.71, A:M.124, A:W.271 Hydrogen bonds: A:G.50, A:A.71, A:S.72, A:V.98, A:E.99, A:M.115, A:Y.117, A:S.127 Water bridges: A:Q.15, A:E.70, A:S.72, A:E.122 pi-Stacking: A:Y.117, A:W.271 44T.5: 21 residues within 4Å: Chain B: Y.9, M.18, R.24, G.48, G.50, E.70, A.71, S.72, G.96, K.97, V.98, E.99, E.113, P.114, M.115, Y.117, E.122, M.124, S.127, H.270, W.271 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:A.71, B:M.124 Hydrogen bonds: B:G.50, B:A.71, B:V.98, B:E.99, B:M.115, B:S.127 Water bridges: B:Y.9, B:Q.15, B:S.72 pi-Stacking: B:W.271, B:W.271

14 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.2: 2 residues within 4Å: Chain A: V.101, S.102 No protein-ligand interaction detected (PLIP) UNX.3: 2 residues within 4Å: Chain A: L.268, T.269 No protein-ligand interaction detected (PLIP) UNX.4: 1 residues within 4Å: Chain A: W.259 No protein-ligand interaction detected (PLIP) UNX.6: 1 residues within 4Å: Chain B: W.259 No protein-ligand interaction detected (PLIP) UNX.7: 3 residues within 4Å: Chain B: T.37, D.38, S.254 No protein-ligand interaction detected (PLIP) UNX.8: 2 residues within 4Å: Chain B: T.269, H.270 No protein-ligand interaction detected (PLIP) UNX.9: 3 residues within 4Å: Chain B: P.264, T.265, E.266 No protein-ligand interaction detected (PLIP) UNX.10: 1 residues within 4Å: Chain B: R.202 No protein-ligand interaction detected (PLIP) UNX.11: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) UNX.12: 2 residues within 4Å: Chain B: Y.211, T.212 No protein-ligand interaction detected (PLIP) UNX.13: 1 residues within 4Å: Chain B: Q.14 No protein-ligand interaction detected (PLIP) UNX.14: 4 residues within 4Å: Chain B: Q.162, K.165, V.195, F.329 No protein-ligand interaction detected (PLIP) UNX.15: 3 residues within 4Å: Chain B: Y.170, Q.171, S.180 No protein-ligand interaction detected (PLIP) UNX.16: 1 residues within 4Å: Chain B: F.163 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zeng, H. et al., Co-crystal structure of human CARM1 in complex with MT556 inhibitor. To Be Published

Release Date

2023-01-18

Peptides

Histone-arginine methyltransferase CARM1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Histone-arginine methyltransferase CARM1