SMTL ID : 7u9o.1

SARS-CoV-2 spike trimer RBD in complex with Fab NE12

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-1-1-mer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: N.318, Q.567 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.318, A:Q.567 NAG.2: 4 residues within 4Å: Chain A: F.325, G.326, F.329, N.330 No protein-ligand interaction detected (PLIP) NAG.3: 2 residues within 4Å: Chain B: T.95, N.221 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.221

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, Z. et al., Potent monoclonal antibodies neutralize Omicron sublineages and other SARS-CoV-2 variants. Cell Rep (2022)

Release Date

2022-11-23

Peptides

Spike glycoprotein: AB
NE12 Fab heavy chain: C
NE12 Fab light chain: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
H

D
L

Spike glycoprotein

NE12 Fab heavy chain

NE12 Fab light chain

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