SMTL ID : 7u9p.1

SARS-CoV-2 spike trimer RBD in complex with Fab NA8

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-1-1-mer

Ligands

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: G.326, F.329, N.330, L.355 No protein-ligand interaction detected (PLIP) NAG.2: 2 residues within 4Å: Chain B: F.46, N.48 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.48, B:N.48 NAG.3: 3 residues within 4Å: Chain B: T.95, N.221, T.223 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.221, B:T.223 NAG.4: 2 residues within 4Å: Chain B: E.268, N.269 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, Z. et al., Potent monoclonal antibodies neutralize Omicron sublineages and other SARS-CoV-2 variants. Cell Rep (2022)

Release Date

2022-11-23

Peptides

Spike glycoprotein: AB
NA8 Fab heavy chain: C
NA8 Fab light chain: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
H

D
L

Spike glycoprotein

NA8 Fab heavy chain

NA8 Fab light chain

Related Entries With Identical Sequence