SMTL ID : 7uaj.1

Crystal structure of apo HPV16 E6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.25 Å

Oligo State

homo-tetramer

Ligands

4 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 14 residues within 4Å: Chain A: N.21, D.23, K.24, W.71, A.72, D.74, R.75, E.120, E.162, P.163, Y.164, F.165, W.239, W.349 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:W.71, A:R.75, A:R.75, A:E.162 GLC-GLC.2: 15 residues within 4Å: Chain B: N.21, D.23, K.24, E.53, W.71, A.72, D.74, R.75, E.120, E.162, P.163, Y.164, F.165, W.239, W.349 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:W.71, B:R.75, B:E.162, B:Y.164 GLC-GLC.3: 13 residues within 4Å: Chain C: N.21, D.23, K.24, W.71, A.72, D.74, R.75, E.120, E.162, P.163, Y.164, W.239, W.349 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:D.74, C:R.75, C:Y.164 GLC-GLC.4: 14 residues within 4Å: Chain D: N.21, D.23, K.24, W.71, A.72, D.74, R.75, E.120, E.162, P.163, Y.164, W.239, W.349, R.353 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:D.74, D:R.75, D:Y.164, D:R.353

8 x ZN: ZINC ION(Non-covalent)

ZN.5: 4 residues within 4Å: Chain A: C.416, C.419, C.449, C.452 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.416, A:C.419, A:C.449, A:C.452 ZN.6: 4 residues within 4Å: Chain A: C.489, C.492, C.522, C.525 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.489, A:C.492, A:C.522, A:C.525 ZN.7: 4 residues within 4Å: Chain B: C.416, C.419, C.449, C.452 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.416, B:C.419, B:C.449, B:C.452 ZN.8: 4 residues within 4Å: Chain B: C.489, C.492, C.522, C.525 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.489, B:C.492, B:C.522, B:C.525 ZN.9: 4 residues within 4Å: Chain C: C.416, C.419, C.449, C.452 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.416, C:C.419, C:C.449, C:C.452 ZN.10: 5 residues within 4Å: Chain C: C.489, C.492, C.522, S.524, C.525 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.489, C:C.492, C:C.522, C:C.525 ZN.11: 4 residues within 4Å: Chain D: C.416, C.419, C.449, C.452 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.416, D:C.419, D:C.449, D:C.452 ZN.12: 4 residues within 4Å: Chain D: C.489, C.492, C.522, C.525 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.489, D:C.492, D:C.522, D:C.525

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shen, Q. et al., Disorder-to-order transition of the interdomain linker of HPV E6 upon E6AP binding reshapes p53 binding pocket. To Be Published

Release Date

2023-03-15

Peptides

Maltose/maltodextrin-binding periplasmic protein,Protein E6: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Maltose/maltodextrin-binding periplasmic protein,Protein E6