SMTL ID : 7uaw.1

Structure of Clostridium botulinum prophage Tad1 in complex with 1''-2' gcADPR

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.72 Å

Oligo State

homo-dimer

Ligands

2 x MF6: (1S,3R,4R,6R,9S,11R,14R,15S,16R,18R)-4-(6-amino-9H-purin-9-yl)-9,11,15,16,18-pentahydroxy-2,5,8,10,12,17-hexaoxa-9lambda~5~,11lambda~5~-diphosphatricyclo[12.2.1.1~3,6~]octadecane-9,11-dione(Non-covalent)

MF6.1: 18 residues within 4Å: Chain A: P.25, G.26, H.30, Q.54, K.55, G.56, A.57, R.58, R.110, R.114, L.120, G.121, T.122, N.123 Chain B: R.79, F.83, F.88, N.93 23 PLIP interactions: 7 interactions with chain B, 16 interactions with chain A Hydrogen bonds: B:R.79, B:R.79, B:N.93, B:N.93, A:H.30, A:G.56, A:R.58, A:R.110, A:R.110, A:G.121, A:T.122, A:N.123 Water bridges: B:S.90, A:A.57, A:R.58, A:N.123 pi-Stacking: B:F.83, B:F.83 Salt bridges: A:R.58, A:R.110, A:R.114 pi-Cation interactions: A:R.110, A:R.110 MF6.2: 18 residues within 4Å: Chain A: R.79, F.83, F.88, N.93 Chain B: P.25, G.26, H.30, Q.54, K.55, G.56, A.57, R.58, R.110, R.114, L.120, G.121, T.122, N.123 21 PLIP interactions: 15 interactions with chain B, 6 interactions with chain A Hydrogen bonds: B:H.30, B:G.56, B:R.58, B:R.110, B:R.110, B:G.121, B:T.122, B:N.123, A:R.79, A:R.79, A:N.93, A:N.93 Water bridges: B:A.57, B:R.58 Salt bridges: B:R.58, B:R.110, B:R.114 pi-Cation interactions: B:R.110, B:R.110 pi-Stacking: A:F.83, A:F.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Leavitt, A. et al., Viruses inhibit TIR gcADPR signalling to overcome bacterial defence. Nature (2022)

Release Date

2022-10-05

Peptides

ABC transporter ATPase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ABC transporter ATPase

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