SMTL ID : 7ubq.1

The crystal structure of the wild-type of E. coli YGGS in complex with PNP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x PXP: PYRIDOXINE-5'-PHOSPHATE(Non-covalent)

PXP.1: 12 residues within 4Å: Chain A: V.34, K.36, N.57, I.82, I.166, M.204, S.205, R.220, I.221, G.222, T.223, R.229 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:V.34, A:I.82, A:I.166 Hydrogen bonds: A:K.36, A:K.36, A:N.57, A:S.205, A:R.220, A:R.220, A:G.222, A:T.223 Salt bridges: A:R.229

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tramonti, A. et al., Characterization of the Escherichia coli pyridoxal 5'-phosphate homeostasis protein (YggS): Role of lysine residues in PLP binding and protein stability. Protein Sci. (2022)

Release Date

2022-03-23

Peptides

Pyridoxal phosphate homeostasis protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Pyridoxal phosphate homeostasis protein

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