SMTL ID : 7ubt.1

Stat5a Core in complex with Compound 18

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

monomer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: G.529, D.544, Y.551 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.544 Water bridges: A:G.529, A:G.529, A:K.543 GOL.2: 7 residues within 4Å: Chain A: A.130, G.131, N.132, G.133, K.382, A.385, E.386 4 PLIP interactions: 4 interactions with chain A Water bridges: A:G.131, A:K.382, A:A.385, A:A.385 GOL.3: 7 residues within 4Å: Chain A: N.380, K.384, N.390, R.391, G.392, L.393, T.394 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.380, A:K.384, A:G.392 GOL.4: 6 residues within 4Å: Chain A: R.109, Q.112, T.113, D.190, I.191, A.194 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.109, A:R.109, A:R.109, A:Q.112 Water bridges: A:T.113, A:T.113

1 x MIW: N-{5-[difluoro(phosphono)methyl]-1-benzothiophene-2-carbonyl}-3-methyl-L-valyl-L-prolyl-N~3~-(1,3-benzothiazol-5-yl)-N,N-dimethyl-beta-alaninamide(Non-covalent)

MIW.5: 13 residues within 4Å: Chain A: K.468, R.486, S.488, D.489, S.490, T.496, W.499, N.510, L.511, K.512, P.513, F.514, D.518 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:W.499, A:L.511, A:K.512, A:P.513, A:F.514 Hydrogen bonds: A:K.468, A:R.486, A:R.486, A:D.489, A:S.490, A:N.510, A:K.512 Water bridges: A:R.527 pi-Cation interactions: A:K.512

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kaneshige, A. et al., Discovery of a Potent and Selective STAT5 PROTAC Degrader with Strong Antitumor Activity In Vivo in Acute Myeloid Leukemia. J.Med.Chem. (2023)

Release Date

2023-02-15

Peptides

Signal transducer and activator of transcription 5A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Signal transducer and activator of transcription 5A

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