SMTL ID : 7ucw.1

Structure of mouse Decr1 in complex with 2'-5' oligoadenylate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

homo-tetramer

Ligands

4 x 25L: [[(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-4-[[(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-4-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-3-hydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-3-hydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] phosphono hydrogen phosphate(Non-covalent)

25L.1: 16 residues within 4Å: Chain A: G.32, T.35, G.36, S.56, R.57, N.58, V.61, C.82, D.83, V.84, R.85, N.110, A.111, A.112, G.113, I.133 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:T.35, A:T.35, A:S.56, A:R.57, A:R.57, A:R.57, A:N.58, A:N.58, A:D.83, A:V.84, A:A.112, A:A.112 Water bridges: A:T.35, A:L.37, A:R.85, A:N.110, A:N.110, A:N.114, A:N.114 Salt bridges: A:R.57 25L.2: 16 residues within 4Å: Chain B: G.32, T.35, G.36, S.56, R.57, N.58, V.61, C.82, D.83, V.84, R.85, N.110, A.111, A.112, G.113, I.133 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:T.35, B:T.35, B:S.56, B:R.57, B:R.57, B:R.57, B:N.58, B:N.58, B:V.84, B:A.112, B:A.112 Water bridges: B:T.35, B:N.110, B:N.110 Salt bridges: B:R.57 25L.3: 16 residues within 4Å: Chain C: G.32, T.35, G.36, S.56, R.57, N.58, V.61, C.82, D.83, V.84, R.85, A.111, A.112, G.113, N.114, I.133 18 PLIP interactions: 18 interactions with chain C Hydrogen bonds: C:T.35, C:T.35, C:T.35, C:T.35, C:S.56, C:R.57, C:R.57, C:R.57, C:N.58, C:N.58, C:D.83, C:D.83, C:V.84, C:A.112, C:A.112 Water bridges: C:T.35, C:N.114 Salt bridges: C:R.57 25L.4: 14 residues within 4Å: Chain D: G.32, T.35, S.56, R.57, N.58, V.61, C.82, D.83, V.84, R.85, A.111, A.112, G.113, I.133 15 PLIP interactions: 15 interactions with chain D Hydrogen bonds: D:T.35, D:S.56, D:R.57, D:R.57, D:R.57, D:N.58, D:N.58, D:D.83, D:D.83, D:V.84, D:A.112, D:A.112 Water bridges: D:T.35, D:R.85 Salt bridges: D:R.57

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Govande, A.A. et al., RNase L-activating 2'-5' oligoadenylates bind ABCF1, ABCF3 and Decr-1. J.Gen.Virol. (2023)

Release Date

2023-03-22

Peptides

Decr1 protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Decr1 protein