SMTL ID : 7ucx.1

LRP8 11H1 Fab complexed to a cyclized CR1 peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.72 Å

Oligo State

hetero-1-1-1-mer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: R.9 Chain C: T.97, H.98, V.99 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:T.97, C:V.99 Salt bridges: A:R.9 SO4.2: 3 residues within 4Å: Chain B: F.27, T.28, Y.32 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:T.28, B:Y.32 Water bridges: B:T.28, B:N.31, B:R.98 SO4.3: 5 residues within 4Å: Chain C: P.12, V.13, S.14, D.17, K.112 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:S.14, C:D.17, C:D.17 Salt bridges: C:K.112

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Argiriadi, M.A. et al., The use of cyclic peptide antigens to generate LRP8 specific antibodies. Front Drug Discov (Lausanne) (2023)

Release Date

2023-01-18

Peptides

Cyclized CR1 peptide: A
11H1 Fab Heavy chain: B
11H1 Fab Light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
H

C
L

Cyclized CR1 peptide

11H1 Fab Heavy chain

11H1 Fab Light chain