SMTL ID : 7udi.1

Full-length dimer of DNA-Damage Response Protein C from Deinococcus radiodurans

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.24 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: F.10, G.11, S.12, R.85 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.12, A:S.12 Salt bridges: A:R.85 SO4.2: 4 residues within 4Å: Chain B: G.11, S.12, R.81, R.85 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.12, B:S.12 Salt bridges: B:R.81, B:R.85 SO4.3: 5 residues within 4Å: Chain B: S.149, N.152, D.159, S.160, A.161 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.152, B:S.160, B:S.160, B:A.161 SO4.4: 2 residues within 4Å: Chain A: V.98 Chain B: W.116 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Szabla, R. et al., DdrC, a unique DNA repair factor from D. radiodurans, senses and stabilizes DNA breaks through a novel lesion-recognition mechanism. Nucleic Acids Res. (2024)

Release Date

2023-02-22

Peptides

DNA damage response protein DdrC: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

DNA damage response protein DdrC