SMTL ID : 7ue1.1

HIV-1 Integrase Catalytic Core Domain Mutant (KGD) in Complex with Inhibitor GRL-142

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-dimer

Ligands

1 x 7OA: (3S,3aR,5R,7aS,8S)-hexahydro-4H-3,5-methanofuro[2,3-b]pyran-8-yl [(2S,3R)-4-[{[2-(cyclopropylamino)-1,3-benzothiazol-6-yl]sulfonyl}(2-methylpropyl)amino]-1-(3,5-difluorophenyl)-3-hydroxybutan-2-yl]carbamate(Non-covalent)

7OA.1: 16 residues within 4Å: Chain A: D.121, Q.122, A.123, E.124, T.128, M.132 Chain B: Q.49, A.52, Y.53, L.56, T.78, A.79, A.82, A.83, W.85, W.86 7 PLIP interactions: 4 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:T.78, B:A.79, B:A.82, B:W.86, A:E.124 Hydrogen bonds: A:D.121, A:E.124

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain B: T.47, G.48, Q.49, S.77 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.47, B:G.48, B:Q.49, B:Q.49

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Aoki, M. et al., GRL-142 binds to and impairs HIV-1 integrase nuclear localization signal and potently suppresses highly INSTI-resistant HIV-1 variants. Sci Adv (2023)

Release Date

2023-03-22

Peptides

Integrase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Integrase